[Xplor-nih] seq2psf and pdb2psf

[Charles at Schwieters.org]

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Hi Blanton--

> I am trying to use the pdb2psf and seq2psf utilities to generate structure
> files for an RNA.  Whenever I create the .psf file all H2's are called H2''s

this is due to a small bug. You should be able to fix it using the -rna
flag with seq2psf.

> and the amino notations are denoted HN' and HN''.  

this is due to explicit renaming in psfGen.py - around line 409. You can
manually remove it if you would like. In the next release, this renaming
will be made optional.

Sorry for the confusion.

regards--
Charles
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