[Xplor-nih] How do I interpret the calculation result
Charles at Schwieters.org
Charles at Schwieters.org
Wed Jun 6 16:25:35 EDT 2007
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Hello Xiaohu--
>
> fit selection: name CA
>
> comparision selection: not name H* and not resname ANI
>
> Can anyone suggest How do I interpret the numbers in the last two columns in
> the above output? My personal understanding is that the "fit' column
> bascially calculates the RMSD of each structure with respect to the average
> using CA ONLY and the "comparison" column does RMSD of each structure with
> respect to the average using all heavy atoms (in my protein sample, 15N,
> 13C, O, S).
> Is this correct?
exactly.
> One more little detail, what's ANI?
>
The residue name ANI is used for the tensor atoms used by the RDC
potential term. You usually don't care about the positions of these
atoms.
best regards--
Charles
-----BEGIN PGP SIGNATURE-----
Version: GnuPG v1.4.6 (GNU/Linux)
Comment: Processed by Mailcrypt 3.5.8+ <http://mailcrypt.sourceforge.net/>
iD8DBQFGZxg/PK2zrJwS/lYRAn1xAJ4qym6s85FUD3wCx77nzi2vW6vN4gCePN7f
YAx3DlUFVbw7CXHUADAegwA=
=sSJ2
-----END PGP SIGNATURE-----
More information about the Xplor-nih
mailing list