[Xplor-nih] Install XPLOR NIH on iMac G5 PowerPC

Wed Feb 27 05:44:03 EST 2008

Hello Charles

Thank you for your help.

So,
I&rsquo;ve put the Xplor-NIH 2.19 distribution on my « Desktop
», in a personnal Directort (because I&rsquo;ve not the ~/opt
directory on my computer)

When I performed the initial
configuration with this command line &hellip; :

ah-1342x-6392:~/Desktop/PHILIPPE/programmes/XPLOR/xplor-nih-2.19
autres$ ./configure -symlinks /bin

&hellip; this
error appeared :

xplor not configured for platform:
Darwin_7
configure failed

I checked which
version of Darwin is already installed on my computer : it&rsquo;s the
version 7.9.0

So, I downladed these packages :
xplor-nih-2.13-db.tar.gz and xplor-nih-2.13-Darwin_7.tar.gz
After
unzipped the files, I launch this command line :

ah-1342x-6392:~/Desktop/PHILIPPE/programmes/XPLOR/xplor-nih-2.13
autres$ ./configure -symlinks /usr/bin

But, there
are some errors :

XPLOR-NIH version 2.13 

 C.D. Schwieters, J.J. 
Kuszewski,       based on X-PLOR 3.851 by
A.T. Brunger 
 N. Tjandra, and G.M. Clore 
 J. Magn.
Res., 160, 66-74 (2003).      
http://nmr.cit.nih.gov/xplor-nih 

 User:
autres       on:
darwin/ppc      at: 27-Feb-08 11:21:27
[stdin](1): import compileall; compileall.compile_dir('python')
Listing python ...
Listing python/bin.Darwin_7 ...
Listing
python/bin.Darwin_7/lib ...
Listing python/bin.Darwin_7/lib/python2.3
...
Listing python/bin.Darwin_7/lib/python2.3/bsddb ...
Listing
python/bin.Darwin_7/lib/python2.3/bsddb/test ...
Listing
python/bin.Darwin_7/lib/python2.3/compiler ...
Listing
python/bin.Darwin_7/lib/python2.3/config ...
Listing
python/bin.Darwin_7/lib/python2.3/curses ...
Listing
python/bin.Darwin_7/lib/python2.3/distutils ...
Listing
python/bin.Darwin_7/lib/python2.3/distutils/command ...
Listing
python/bin.Darwin_7/lib/python2.3/email ...
Listing
python/bin.Darwin_7/lib/python2.3/email/test ...
Listing
python/bin.Darwin_7/lib/python2.3/email/test/data ...
Listing
python/bin.Darwin_7/lib/python2.3/encodings ...
Listing
python/bin.Darwin_7/lib/python2.3/hotshot ...
Listing
python/bin.Darwin_7/lib/python2.3/idlelib ...
Listing
python/bin.Darwin_7/lib/python2.3/idlelib/Icons ...
Listing
python/bin.Darwin_7/lib/python2.3/lib-dynload ...
Listing
python/bin.Darwin_7/lib/python2.3/lib-old ...
Listing
python/bin.Darwin_7/lib/python2.3/lib-tk ...
Listing
python/bin.Darwin_7/lib/python2.3/logging ...
Listing
python/bin.Darwin_7/lib/python2.3/plat-darwin ...
Listing
python/bin.Darwin_7/lib/python2.3/plat-mac ...
Listing
python/bin.Darwin_7/lib/python2.3/plat-mac/Carbon ...
Listing
python/bin.Darwin_7/lib/python2.3/plat-mac/lib-scriptpackages ...
Listing
python/bin.Darwin_7/lib/python2.3/plat-mac/lib-scriptpackages/CodeWarrior
...
Listing
python/bin.Darwin_7/lib/python2.3/plat-mac/lib-scriptpackages/Explorer
...
Listing
python/bin.Darwin_7/lib/python2.3/plat-mac/lib-scriptpackages/Finder
...
Listing
python/bin.Darwin_7/lib/python2.3/plat-mac/lib-scriptpackages/Netscape
...
Listing
python/bin.Darwin_7/lib/python2.3/plat-mac/lib-scriptpackages/StdSuites
...
Listing
python/bin.Darwin_7/lib/python2.3/plat-mac/lib-scriptpackages/SystemEvents
...
Listing
python/bin.Darwin_7/lib/python2.3/plat-mac/lib-scriptpackages/Terminal
...
Listing
python/bin.Darwin_7/lib/python2.3/plat-mac/lib-scriptpackages/_builtinSuites
...
Listing python/bin.Darwin_7/lib/python2.3/site-packages ...
Listing python/bin.Darwin_7/lib/python2.3/test ...
Compiling
python/bin.Darwin_7/lib/python2.3/test/badsyntax_future3.py ...
SyntaxError: ('future feature rested_snopes is not defined',)

Compiling python/bin.Darwin_7/lib/python2.3/test/badsyntax_future4.py
...
SyntaxError: ('from __future__ imports must occur at the
beginning of the file',)

Compiling
python/bin.Darwin_7/lib/python2.3/test/badsyntax_future5.py ...
SyntaxError: ('from __future__ imports must occur at the beginning of
the file',)

Compiling
python/bin.Darwin_7/lib/python2.3/test/badsyntax_future6.py ...
SyntaxError: ('from __future__ imports must occur at the beginning of
the file',)

Compiling
python/bin.Darwin_7/lib/python2.3/test/badsyntax_future7.py ...
SyntaxError: ('from __future__ imports must occur at the beginning of
the file',)

Compiling
python/bin.Darwin_7/lib/python2.3/test/badsyntax_nocaret.py ...
  File
"python/bin.Darwin_7/lib/python2.3/test/badsyntax_nocaret.py",
line 2
    [x for x in x] = x
SyntaxError: can't
assign to list comprehension

Listing
python/bin.Darwin_7/lib/python2.3/test/output ...
Listing
python/bin.Darwin_7/lib/python2.3/xml ...
Listing
python/bin.Darwin_7/lib/python2.3/xml/dom ...
Listing
python/bin.Darwin_7/lib/python2.3/xml/parsers ...
Listing
python/bin.Darwin_7/lib/python2.3/xml/sax ...
Listing python/dist
...
Listing python/tests ...
Listing python/wrappers ...
 HEAP:   maximum use=  1101310 current use= 
1085702
 X-PLOR: total CPU time=     
2.2600 s
 X-PLOR: entry time at 11:21:27 27-Feb-08
 X-PLOR: exit time at 11:21:28 27-Feb-08

Then I tested the installation but there are some errors too :

&hellip;
pyCmd...........FAILED
tclCmd..........FAILED
2 failures out of 145 tests. Total CPU time:
163.0900
&hellip;
tkInterTest.....FAILED
1 failures out of
26 tests. Total CPU time: 165.0100
&hellip;
0 failures out of 8
tests. Total CPU time: 74.4300
failures detected in  XPLOR
python

Are theses errors important for running
Xplor ?

Best regards,

Le Mar 26 février
2008 15:27, Charles at Schwieters.org a écrit :
> -----BEGIN
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> 
> 
> Hello Philippe--
> 
> 
>> 
>> I'll try to install Xplor NIH on my computer :
>>
it's a iMac G5 with a PowerPC processor and Mac OS X 10.3.9.
>>

>> So, I've download theses packages (that seem good for me)
:
>> i) xplor-nih-2.19-db.tar.gz and ii)
xplor-nih-2.19-Darwin_8.tar.gz
>> 
> 
> Please
try 2.19 and let me know how it goes. This version was built and
>
tested on 10.4.9. YOu may have to go back to 2.15 or earlier to get a 
> version of Xplor-NIH which was verified to work with your old Mac
OS X 
> version.
> 
>> But, I'm not familiar
with the Mac Operating System. So I don't know in
>>  which
folder I have to install the packages. And how modify the path
>> to carry out Xplor NIH anywhere ?
>> 
> 
> If you have root privilege on the machine, please follow the
> instructions from p. 5 of the online Xplor-NIH tutorial. If you
don't have
> root, you might place the Xplor-NIH distribution in
your ~/opt directory.
> 
> 2. unpack these files where you
wish them to live:
> gzcat xplor-nih-2.19-db.tar.gz | (cd /opt ;
tar xf -) gzcat
> xplor-nih-2.19-Darwin_8.tar.gz | (cd /opt ; tar
xf -)
> 
> 3. perform initial configuration:
> cd
/opt/xplor-nih-2.19 ./configure -symlinks /usr/local/bin
> (the
-symlinks option creates symbolic links in the specified directory
> for xplor and other commands - it is not necessary, but it avoids
needing
> to change your PATH variable. )
> 
> 4.
test the new installation:
> bin/testDist
> 
>
best regards-- Charles
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Philippe REYMOND
---------------------------------------
philippe.reymond at u-psud.fr
philippe.reymond at curie.fr
---------------------------------------
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