For the interleukin IL8 protein, which is composed of 2362 atoms (Clore et al., 1990), the “dg_sub_embed.inp" distance geometry protocol required 20741 sec, the “dgsa.inp" protocol required 27274 sec, the “refine.inp" protocol required 14226 sec, the ab initio “sa.inp" protocol required 28 hours, the “dg_full_embed.inp" protocol required 8 days, and the “generate_template.inp" protocol required 486 sec on a CONVEX C210 for a family of ten structures. The success rate was between 40 and 50% for the hybrid DG-SA protocols and around 60% for the ab initio SA protocol. The default values for duration of heating and cooling stages were used, except for the ab initio “sa.inp" protocol, which required 10000 heating steps and 3000 cooling steps.
Xplor-NIH 2023-11-10