A collection of Pot objects - which is itself a Pot object. 
 
An instantiated object will act like a Python Sequence- it is iterable,
indexable (by position number, and by instance name), and the len()
builtin works as expected.
 
Constructor:
  PotList(NAME) 
   NAME is a name given to this instance of the PotList class.
 
Methods:
 
  only the standard potential terms exist:
 
  potName()      - returns 'PotList'
  instanceName() - returns NAME given in the constructor
 
  scale()/ setScale(scaleFac) 
                 - get/set a scale factor for this term
                   NOTE: this is independent of scalings set within
                        the XPLOR interface.
 
  calcEnergy()                   - calc energy without and with gradient
  calcEnergyAndDerivs(DerivList) -   evaluation. Return the value of energy
                                 - these calculate and sum energy of each term
                                 - in the list.
 
  energyReports()      - return a list of energyReport.EnergyReports for 
                         each term.
  clearEnergyReports() - clear the EnergyReport list.
 
  violations()         - report the sum of all violations
  rms()                - report the average rmsd. If the PotList consists of 
                         term which are all the same type, and which contain
                         restraints, the returned value R is computed as
                         
                             R^2 = sum_i N_i * w_i * R_i^2 / (sum_i N_i * w_i)
 
                         where for term i, R_i is rms(), w_i is scale(), N_i is
                         numRestraints(). If the terms are of the same type, 
                         but don't have a meaningful concept of restraint 
                         (numRestraints()==-1), then N_i is set to 1 in the 
                         above equation.
 
  append(pot)          - add a new term to the list.
 
  byName(instanceName) - return the potential term specified.
 

Classes
		__builtin__.object CDSList_rc_Pot CDSList_rc_PotPtr Modified ModifiedPtr ModifiedBase ModifiedBasePtr PotList_LetterClass PotList_LetterClassPtr rc_Pot PotList PotListPtr rc_PotPtr   class CDSList_rc_Pot(__builtin__.object)       Methods defined here: __del__(self, destroy=<built-in function delete_CDSList_rc_Pot>) __delitem__(*args) __getattr__ lambda self, name __getitem__(*args) __getslice__(*args) __init__(self, *args) __len__(*args) __repr__(self) __setattr__ lambda self, name, value __setitem__(*args) help(*args) Data and other attributes defined here: __dict__ = <dictproxy object at 0x13592b8> dictionary for instance variables (if defined) __swig_getmethods__ = {} __swig_setmethods__ = {} __weakref__ = <attribute '__weakref__' of 'CDSList_rc_Pot' objects> list of weak references to the object (if defined)   class CDSList_rc_PotPtr(CDSList_rc_Pot)       Method resolution order: CDSList_rc_PotPtr CDSList_rc_Pot __builtin__.object Methods defined here: __init__(self, this) Methods inherited from CDSList_rc_Pot: __del__(self, destroy=<built-in function delete_CDSList_rc_Pot>) __delitem__(*args) __getattr__ lambda self, name __getitem__(*args) __getslice__(*args) __len__(*args) __repr__(self) __setattr__ lambda self, name, value __setitem__(*args) help(*args) Data and other attributes inherited from CDSList_rc_Pot: __dict__ = <dictproxy object at 0x13591d8> dictionary for instance variables (if defined) __swig_getmethods__ = {} __swig_setmethods__ = {} __weakref__ = <attribute '__weakref__' of 'CDSList_rc_Pot' objects> list of weak references to the object (if defined)   class Modified(__builtin__.object)       Methods defined here: __call__(*args) __del__(self, destroy=<built-in function delete_Modified>) __getattr__ lambda self, name __init__(self, *args) __repr__(self) __setattr__ lambda self, name, value clear(*args) set(*args) update(*args) value(*args) Data and other attributes defined here: MOD_SELF = 1 MOD_SIMULATION = 2 __dict__ = <dictproxy object at 0x13593d0> dictionary for instance variables (if defined) __swig_getmethods__ = {} __swig_setmethods__ = {} __weakref__ = <attribute '__weakref__' of 'Modified' objects> list of weak references to the object (if defined)   class ModifiedBase(__builtin__.object)       Methods defined here: __del__(self, destroy=<built-in function delete_ModifiedBase>) __getattr__ lambda self, name __init__(self) __repr__(self) __setattr__ lambda self, name, value registerTo(*args) unRegister(*args) updateValues(*args) Properties defined here: modified get = ModifiedBase_modified_get(...) set = ModifiedBase_modified_set(...) registeredSimulations get = ModifiedBase_registeredSimulations_get(...) set = ModifiedBase_registeredSimulations_set(...) Data and other attributes defined here: __dict__ = <dictproxy object at 0x13592f0> dictionary for instance variables (if defined) __swig_getmethods__ = {'modified': <built-in function ModifiedBase_modified_get>, 'registeredSimulations': <built-in function ModifiedBase_registeredSimulations_get>} __swig_setmethods__ = {'modified': <built-in function ModifiedBase_modified_set>, 'registeredSimulations': <built-in function ModifiedBase_registeredSimulations_set>} __weakref__ = <attribute '__weakref__' of 'ModifiedBase' objects> list of weak references to the object (if defined)   class ModifiedBasePtr(ModifiedBase)       Method resolution order: ModifiedBasePtr ModifiedBase __builtin__.object Methods defined here: __init__(self, this) Methods inherited from ModifiedBase: __del__(self, destroy=<built-in function delete_ModifiedBase>) __getattr__ lambda self, name __repr__(self) __setattr__ lambda self, name, value registerTo(*args) unRegister(*args) updateValues(*args) Properties inherited from ModifiedBase: modified get = ModifiedBase_modified_get(...) set = ModifiedBase_modified_set(...) registeredSimulations get = ModifiedBase_registeredSimulations_get(...) set = ModifiedBase_registeredSimulations_set(...) Data and other attributes inherited from ModifiedBase: __dict__ = <dictproxy object at 0x13598d8> dictionary for instance variables (if defined) __swig_getmethods__ = {'modified': <built-in function ModifiedBase_modified_get>, 'registeredSimulations': <built-in function ModifiedBase_registeredSimulations_get>} __swig_setmethods__ = {'modified': <built-in function ModifiedBase_modified_set>, 'registeredSimulations': <built-in function ModifiedBase_registeredSimulations_set>} __weakref__ = <attribute '__weakref__' of 'ModifiedBase' objects> list of weak references to the object (if defined)   class ModifiedPtr(Modified)       Method resolution order: ModifiedPtr Modified __builtin__.object Methods defined here: __init__(self, this) Methods inherited from Modified: __call__(*args) __del__(self, destroy=<built-in function delete_Modified>) __getattr__ lambda self, name __repr__(self) __setattr__ lambda self, name, value clear(*args) set(*args) update(*args) value(*args) Data and other attributes inherited from Modified: MOD_SELF = 1 MOD_SIMULATION = 2 __dict__ = <dictproxy object at 0x13598d8> dictionary for instance variables (if defined) __swig_getmethods__ = {} __swig_setmethods__ = {} __weakref__ = <attribute '__weakref__' of 'Modified' objects> list of weak references to the object (if defined)   class PotList(rc_Pot)       Method resolution order: PotList rc_Pot __builtin__.object Methods defined here: __del__(self, destroy=<built-in function delete_PotList>) __deref__(*args) __getattr__ lambda self, name __getitem__(self, cnt) __getslice__(*args) __init__(self, *args) __len__(*args) __mul__(*args) __oldinit__ = __init__(self, *args) __repr__(self) __setattr__ lambda self, name, value add(self, pot) addEnergyReport(*args) append(self, pot) byName(*args) clearEnergyReports(*args) copy(self, potList) energyMaybeDerivs0(*args) energyMaybeDerivs1(*args) energyMaybeDerivs2(*args) energyMaybeDerivs3(*args) energyMaybeDerivs4(*args) energyReports(*args) getitem_int(*args) getitem_string(*args) help(*args) incrRefCount(*args) instanceData(*args) list(*args) numRestraints(*args) pointer(*args) registerInstanceData(*args) registerTo(*args) remove(*args) removeAll(*args) renamed_add(*args) resetPotName(*args) rms(*args) setThreshold(*args) showReport(*args) simulation(*args) size(*args) threshold(*args) unRegister(*args) updateValues(*args) violations(*args) Properties defined here: instanceData_ get = PotList_instanceData__get(...) set = PotList_instanceData__set(...) modified get = PotList_modified_get(...) set = PotList_modified_set(...) registeredSimulations get = PotList_registeredSimulations_get(...) set = PotList_registeredSimulations_set(...) Data and other attributes defined here: __swig_getmethods__ = {'instanceData_': <built-in function PotList_instanceData__get>, 'modified': <built-in function PotList_modified_get>, 'registeredSimulations': <built-in function PotList_registeredSimulations_get>} __swig_setmethods__ = {'instanceData_': <built-in function PotList_instanceData__set>, 'modified': <built-in function PotList_modified_set>, 'registeredSimulations': <built-in function PotList_registeredSimulations_set>} Methods inherited from rc_Pot: calcEnergy(*args) calcEnergyAndDerivs(*args) instanceName(*args) potName(*args) scale(*args) setScale(*args) Data and other attributes inherited from rc_Pot: __dict__ = <dictproxy object at 0x1359670> dictionary for instance variables (if defined) __weakref__ = <attribute '__weakref__' of 'rc_Pot' objects> list of weak references to the object (if defined)   class PotListPtr(PotList)       Method resolution order: PotListPtr PotList rc_Pot __builtin__.object Methods defined here: __init__(self, this) Methods inherited from PotList: __del__(self, destroy=<built-in function delete_PotList>) __deref__(*args) __getattr__ lambda self, name __getitem__(self, cnt) __getslice__(*args) __len__(*args) __mul__(*args) __oldinit__ = __init__(self, *args) __repr__(self) __setattr__ lambda self, name, value add(self, pot) addEnergyReport(*args) append(self, pot) byName(*args) clearEnergyReports(*args) copy(self, potList) energyMaybeDerivs0(*args) energyMaybeDerivs1(*args) energyMaybeDerivs2(*args) energyMaybeDerivs3(*args) energyMaybeDerivs4(*args) energyReports(*args) getitem_int(*args) getitem_string(*args) help(*args) incrRefCount(*args) instanceData(*args) list(*args) numRestraints(*args) pointer(*args) registerInstanceData(*args) registerTo(*args) remove(*args) removeAll(*args) renamed_add(*args) resetPotName(*args) rms(*args) setThreshold(*args) showReport(*args) simulation(*args) size(*args) threshold(*args) unRegister(*args) updateValues(*args) violations(*args) Properties inherited from PotList: instanceData_ get = PotList_instanceData__get(...) set = PotList_instanceData__set(...) modified get = PotList_modified_get(...) set = PotList_modified_set(...) registeredSimulations get = PotList_registeredSimulations_get(...) set = PotList_registeredSimulations_set(...) Data and other attributes inherited from PotList: __swig_getmethods__ = {'instanceData_': <built-in function PotList_instanceData__get>, 'modified': <built-in function PotList_modified_get>, 'registeredSimulations': <built-in function PotList_registeredSimulations_get>} __swig_setmethods__ = {'instanceData_': <built-in function PotList_instanceData__set>, 'modified': <built-in function PotList_modified_set>, 'registeredSimulations': <built-in function PotList_registeredSimulations_set>} Methods inherited from rc_Pot: calcEnergy(*args) calcEnergyAndDerivs(*args) instanceName(*args) potName(*args) scale(*args) setScale(*args) Data and other attributes inherited from rc_Pot: __dict__ = <dictproxy object at 0x1359590> dictionary for instance variables (if defined) __weakref__ = <attribute '__weakref__' of 'rc_Pot' objects> list of weak references to the object (if defined)   class PotList_LetterClass(__builtin__.object)       Methods defined here: __del__(self, destroy=<built-in function delete_PotList_LetterClass>) __getattr__ lambda self, name __getitem__(self, cnt) __getslice__(*args) __init__(self, *args) __len__(*args) __repr__(self) __setattr__ lambda self, name, value add(self, pot) addEnergyReport(*args) append(self, pot) byName(*args) calcEnergy(*args) calcEnergyAndDerivs(*args) clearEnergyReports(*args) copy(self, potList) energyMaybeDerivs0(*args) energyMaybeDerivs1(*args) energyMaybeDerivs2(*args) energyMaybeDerivs3(*args) energyMaybeDerivs4(*args) energyReports(*args) getitem_int(*args) getitem_string(*args) help(*args) list(*args) numRestraints(*args) remove(*args) removeAll(*args) renamed_add(*args) rms(*args) showReport(*args) size(*args) violations(*args) Data and other attributes defined here: __dict__ = <dictproxy object at 0x1359600> dictionary for instance variables (if defined) __swig_getmethods__ = {} __swig_setmethods__ = {} __weakref__ = <attribute '__weakref__' of 'PotList_LetterClass' objects> list of weak references to the object (if defined)   class PotList_LetterClassPtr(PotList_LetterClass)       Method resolution order: PotList_LetterClassPtr PotList_LetterClass __builtin__.object Methods defined here: __init__(self, this) Methods inherited from PotList_LetterClass: __del__(self, destroy=<built-in function delete_PotList_LetterClass>) __getattr__ lambda self, name __getitem__(self, cnt) __getslice__(*args) __len__(*args) __repr__(self) __setattr__ lambda self, name, value add(self, pot) addEnergyReport(*args) append(self, pot) byName(*args) calcEnergy(*args) calcEnergyAndDerivs(*args) clearEnergyReports(*args) copy(self, potList) energyMaybeDerivs0(*args) energyMaybeDerivs1(*args) energyMaybeDerivs2(*args) energyMaybeDerivs3(*args) energyMaybeDerivs4(*args) energyReports(*args) getitem_int(*args) getitem_string(*args) help(*args) list(*args) numRestraints(*args) remove(*args) removeAll(*args) renamed_add(*args) rms(*args) showReport(*args) size(*args) violations(*args) Data and other attributes inherited from PotList_LetterClass: __dict__ = <dictproxy object at 0x13593d0> dictionary for instance variables (if defined) __swig_getmethods__ = {} __swig_setmethods__ = {} __weakref__ = <attribute '__weakref__' of 'PotList_LetterClass' objects> list of weak references to the object (if defined)   class rc_Pot(__builtin__.object)       Methods defined here: __del__(self, destroy=<built-in function delete_rc_Pot>) __getattr__ lambda self, name __init__(self, *args) __repr__(self) __setattr__ lambda self, name, value calcEnergy(*args) calcEnergyAndDerivs(*args) instanceData(*args) instanceName(*args) potName(*args) scale(*args) setScale(*args) Data and other attributes defined here: __dict__ = <dictproxy object at 0x1359440> dictionary for instance variables (if defined) __swig_getmethods__ = {} __swig_setmethods__ = {} __weakref__ = <attribute '__weakref__' of 'rc_Pot' objects> list of weak references to the object (if defined)   class rc_PotPtr(rc_Pot)       Method resolution order: rc_PotPtr rc_Pot __builtin__.object Methods defined here: __init__(self, this) Methods inherited from rc_Pot: __del__(self, destroy=<built-in function delete_rc_Pot>) __getattr__ lambda self, name __repr__(self) __setattr__ lambda self, name, value calcEnergy(*args) calcEnergyAndDerivs(*args) instanceData(*args) instanceName(*args) potName(*args) scale(*args) setScale(*args) Data and other attributes inherited from rc_Pot: __dict__ = <dictproxy object at 0x1359600> dictionary for instance variables (if defined) __swig_getmethods__ = {} __swig_setmethods__ = {} __weakref__ = <attribute '__weakref__' of 'rc_Pot' objects> list of weak references to the object (if defined)

Functions
		help(...)