Potential term to restrain the protein in with the density map derived either 
from experimental or theory. 
 
constructor: ProbDistPot(instance,targetMap,
                        atomsel,CDataflag,sim);
             - targetMap contains the map to which the structure need to be
               fitted
             - atomSel contains the atoms that is used to generate the 
               map from the current simulation.
             - CDataflag a flag that helps in copying the density value 
               from the targetMap to the newly created map. 
 
 
methods:
 calcEnergy()                  - calc energy, returns the energy value.
  calcEnergyAndDerivs(derivs)  - calc energy, derivs, returns the energy value.
 
  rms()                        - ranges from 0 to 1. 0 means the maps matches 
                                 perfectly. 1 means maps are dissimilar.
 
  scale()                      - scale factor for this energy term.
 
  info()                       - current info about the state of this instance
 
 
 
# This file was created automatically by SWIG.
# Don't modify this file, modify the SWIG interface instead.
# This file is compatible with both classic and new-style classes.

Classes
		__builtin__.object Modified ModifiedPtr ModifiedBase ModifiedBasePtr ProbDistPot ProbDistPotPtr ProbDistPot_LetterClass ProbDistPot_LetterClassPtr   class Modified(__builtin__.object)           Methods defined here: __call__(*args)   __del__(self, destroy=<built-in function delete_Modified>)   __getattr__ lambda self, name   __init__(self, *args)   __repr__(self)   __setattr__ lambda self, name, value   clear(*args)   set(*args)   update(*args)   value(*args)   Data and other attributes defined here: MOD_SELF = 1 MOD_SIMULATION = 2 __dict__ = <dictproxy object at 0x272ad38>   dictionary for instance variables (if defined) __swig_getmethods__ = {} __swig_setmethods__ = {} __weakref__ = <attribute '__weakref__' of 'Modified' objects>   list of weak references to the object (if defined)   class ModifiedBase(__builtin__.object)           Methods defined here: __del__(self, destroy=<built-in function delete_ModifiedBase>)   __getattr__ lambda self, name   __init__(self)   __repr__(self)   __setattr__ lambda self, name, value   registerTo(*args)   unRegister(*args)   updateValues(*args)   Properties defined here: modified   get = ModifiedBase_modified_get(...)   set = ModifiedBase_modified_set(...)   registeredSimulations   get = ModifiedBase_registeredSimulations_get(...)   set = ModifiedBase_registeredSimulations_set(...)   Data and other attributes defined here: __dict__ = <dictproxy object at 0x272ad38>   dictionary for instance variables (if defined) __swig_getmethods__ = {'modified': <built-in function ModifiedBase_modified_get>, 'registeredSimulations': <built-in function ModifiedBase_registeredSimulations_get>} __swig_setmethods__ = {'modified': <built-in function ModifiedBase_modified_set>, 'registeredSimulations': <built-in function ModifiedBase_registeredSimulations_set>} __weakref__ = <attribute '__weakref__' of 'ModifiedBase' objects>   list of weak references to the object (if defined)   class ModifiedBasePtr(ModifiedBase)           Method resolution order: ModifiedBasePtr ModifiedBase __builtin__.object Methods defined here: __init__(self, this)   Methods inherited from ModifiedBase: __del__(self, destroy=<built-in function delete_ModifiedBase>)   __getattr__ lambda self, name   __repr__(self)   __setattr__ lambda self, name, value   registerTo(*args)   unRegister(*args)   updateValues(*args)   Properties inherited from ModifiedBase: modified   get = ModifiedBase_modified_get(...)   set = ModifiedBase_modified_set(...)   registeredSimulations   get = ModifiedBase_registeredSimulations_get(...)   set = ModifiedBase_registeredSimulations_set(...)   Data and other attributes inherited from ModifiedBase: __dict__ = <dictproxy object at 0x272ab78>   dictionary for instance variables (if defined) __swig_getmethods__ = {'modified': <built-in function ModifiedBase_modified_get>, 'registeredSimulations': <built-in function ModifiedBase_registeredSimulations_get>} __swig_setmethods__ = {'modified': <built-in function ModifiedBase_modified_set>, 'registeredSimulations': <built-in function ModifiedBase_registeredSimulations_set>} __weakref__ = <attribute '__weakref__' of 'ModifiedBase' objects>   list of weak references to the object (if defined)   class ModifiedPtr(Modified)           Method resolution order: ModifiedPtr Modified __builtin__.object Methods defined here: __init__(self, this)   Methods inherited from Modified: __call__(*args)   __del__(self, destroy=<built-in function delete_Modified>)   __getattr__ lambda self, name   __repr__(self)   __setattr__ lambda self, name, value   clear(*args)   set(*args)   update(*args)   value(*args)   Data and other attributes inherited from Modified: MOD_SELF = 1 MOD_SIMULATION = 2 __dict__ = <dictproxy object at 0x272a980>   dictionary for instance variables (if defined) __swig_getmethods__ = {} __swig_setmethods__ = {} __weakref__ = <attribute '__weakref__' of 'Modified' objects>   list of weak references to the object (if defined)   class ProbDistPot(__builtin__.object)           Methods defined here: __del__(self, destroy=<built-in function delete_ProbDistPot>)   __deref__(*args)   __getattr__ lambda self, name   __init__(self, *args)   __mul__(*args)   __oldinit__ = __init__(self, *args)   __repr__(self)   __setattr__ lambda self, name, value   calcEnergy(*args)   calcEnergyAndDerivs(*args)   decrRefCount(*args)   energyMaybeDerivs0(*args)   energyMaybeDerivs1(*args)   energyMaybeDerivs2(*args)   energyMaybeDerivs3(*args)   energyMaybeDerivs4(*args)   ensWeight(*args)   help(*args)   incrRefCount(*args)   info(*args)   instanceData(*args)   instanceName(*args)   numRestraints(*args)   pointer(*args)   potName(*args)   potType(*args)   registerInstanceData(*args)   registerTo(*args)   resetPotName(*args)   rms(*args)   scale(*args)   setEnsWeights(*args)   setPotType(*args)   setScale(*args)   setThreshold(*args)   setUseSimEnsWeights(*args)   simulation(*args)   threshold(*args)   unRegister(*args)   updateDelta(*args)   updateValues(*args)   useSimEnsWeights(*args)   violations(*args)   Properties defined here: U   get = ProbDistPot_U_get(...)   set = ProbDistPot_U_set(...)   Va   get = ProbDistPot_Va_get(...)   set = ProbDistPot_Va_set(...)   Vb   get = ProbDistPot_Vb_get(...)   set = ProbDistPot_Vb_set(...)   instanceData_   get = ProbDistPot_instanceData__get(...)   set = ProbDistPot_instanceData__set(...)   modified   get = ProbDistPot_modified_get(...)   set = ProbDistPot_modified_set(...)   numAtoms   get = ProbDistPot_numAtoms_get(...)   set = ProbDistPot_numAtoms_set(...)   prStruct   get = ProbDistPot_prStruct_get(...)   set = ProbDistPot_prStruct_set(...)   registeredSimulations   get = ProbDistPot_registeredSimulations_get(...)   set = ProbDistPot_registeredSimulations_set(...)   rmsval   get = ProbDistPot_rmsval_get(...)   set = ProbDistPot_rmsval_set(...)   targetMap   get = ProbDistPot_targetMap_get(...)   set = ProbDistPot_targetMap_set(...)   Data and other attributes defined here: __dict__ = <dictproxy object at 0x272ad70>   dictionary for instance variables (if defined) __swig_getmethods__ = {'U': <built-in function ProbDistPot_U_get>, 'Va': <built-in function ProbDistPot_Va_get>, 'Vb': <built-in function ProbDistPot_Vb_get>, 'instanceData_': <built-in function ProbDistPot_instanceData__get>, 'modified': <built-in function ProbDistPot_modified_get>, 'numAtoms': <built-in function ProbDistPot_numAtoms_get>, 'prStruct': <built-in function ProbDistPot_prStruct_get>, 'registeredSimulations': <built-in function ProbDistPot_registeredSimulations_get>, 'rmsval': <built-in function ProbDistPot_rmsval_get>, 'targetMap': <built-in function ProbDistPot_targetMap_get>} __swig_setmethods__ = {'U': <built-in function ProbDistPot_U_set>, 'Va': <built-in function ProbDistPot_Va_set>, 'Vb': <built-in function ProbDistPot_Vb_set>, 'instanceData_': <built-in function ProbDistPot_instanceData__set>, 'modified': <built-in function ProbDistPot_modified_set>, 'numAtoms': <built-in function ProbDistPot_numAtoms_set>, 'prStruct': <built-in function ProbDistPot_prStruct_set>, 'registeredSimulations': <built-in function ProbDistPot_registeredSimulations_set>, 'rmsval': <built-in function ProbDistPot_rmsval_set>, 'targetMap': <built-in function ProbDistPot_targetMap_set>} __weakref__ = <attribute '__weakref__' of 'ProbDistPot' objects>   list of weak references to the object (if defined)   class ProbDistPotPtr(ProbDistPot)           Method resolution order: ProbDistPotPtr ProbDistPot __builtin__.object Methods defined here: __init__(self, this)   Methods inherited from ProbDistPot: __del__(self, destroy=<built-in function delete_ProbDistPot>)   __deref__(*args)   __getattr__ lambda self, name   __mul__(*args)   __oldinit__ = __init__(self, *args)   __repr__(self)   __setattr__ lambda self, name, value   calcEnergy(*args)   calcEnergyAndDerivs(*args)   decrRefCount(*args)   energyMaybeDerivs0(*args)   energyMaybeDerivs1(*args)   energyMaybeDerivs2(*args)   energyMaybeDerivs3(*args)   energyMaybeDerivs4(*args)   ensWeight(*args)   help(*args)   incrRefCount(*args)   info(*args)   instanceData(*args)   instanceName(*args)   numRestraints(*args)   pointer(*args)   potName(*args)   potType(*args)   registerInstanceData(*args)   registerTo(*args)   resetPotName(*args)   rms(*args)   scale(*args)   setEnsWeights(*args)   setPotType(*args)   setScale(*args)   setThreshold(*args)   setUseSimEnsWeights(*args)   simulation(*args)   threshold(*args)   unRegister(*args)   updateDelta(*args)   updateValues(*args)   useSimEnsWeights(*args)   violations(*args)   Properties inherited from ProbDistPot: U   get = ProbDistPot_U_get(...)   set = ProbDistPot_U_set(...)   Va   get = ProbDistPot_Va_get(...)   set = ProbDistPot_Va_set(...)   Vb   get = ProbDistPot_Vb_get(...)   set = ProbDistPot_Vb_set(...)   instanceData_   get = ProbDistPot_instanceData__get(...)   set = ProbDistPot_instanceData__set(...)   modified   get = ProbDistPot_modified_get(...)   set = ProbDistPot_modified_set(...)   numAtoms   get = ProbDistPot_numAtoms_get(...)   set = ProbDistPot_numAtoms_set(...)   prStruct   get = ProbDistPot_prStruct_get(...)   set = ProbDistPot_prStruct_set(...)   registeredSimulations   get = ProbDistPot_registeredSimulations_get(...)   set = ProbDistPot_registeredSimulations_set(...)   rmsval   get = ProbDistPot_rmsval_get(...)   set = ProbDistPot_rmsval_set(...)   targetMap   get = ProbDistPot_targetMap_get(...)   set = ProbDistPot_targetMap_set(...)   Data and other attributes inherited from ProbDistPot: __dict__ = <dictproxy object at 0x272aa60>   dictionary for instance variables (if defined) __swig_getmethods__ = {'U': <built-in function ProbDistPot_U_get>, 'Va': <built-in function ProbDistPot_Va_get>, 'Vb': <built-in function ProbDistPot_Vb_get>, 'instanceData_': <built-in function ProbDistPot_instanceData__get>, 'modified': <built-in function ProbDistPot_modified_get>, 'numAtoms': <built-in function ProbDistPot_numAtoms_get>, 'prStruct': <built-in function ProbDistPot_prStruct_get>, 'registeredSimulations': <built-in function ProbDistPot_registeredSimulations_get>, 'rmsval': <built-in function ProbDistPot_rmsval_get>, 'targetMap': <built-in function ProbDistPot_targetMap_get>} __swig_setmethods__ = {'U': <built-in function ProbDistPot_U_set>, 'Va': <built-in function ProbDistPot_Va_set>, 'Vb': <built-in function ProbDistPot_Vb_set>, 'instanceData_': <built-in function ProbDistPot_instanceData__set>, 'modified': <built-in function ProbDistPot_modified_set>, 'numAtoms': <built-in function ProbDistPot_numAtoms_set>, 'prStruct': <built-in function ProbDistPot_prStruct_set>, 'registeredSimulations': <built-in function ProbDistPot_registeredSimulations_set>, 'rmsval': <built-in function ProbDistPot_rmsval_set>, 'targetMap': <built-in function ProbDistPot_targetMap_set>} __weakref__ = <attribute '__weakref__' of 'ProbDistPot' objects>   list of weak references to the object (if defined)   class ProbDistPot_LetterClass(__builtin__.object)           Methods defined here: __del__(self, destroy=<built-in function delete_ProbDistPot_LetterClass>)   __getattr__ lambda self, name   __init__(self, *args)   __repr__(self)   __setattr__ lambda self, name, value   energyMaybeDerivs0(*args)   help(*args)   info(*args)   numRestraints(*args)   potType(*args)   rms(*args)   setPotType(*args)   simulation(*args)   violations(*args)   Properties defined here: U   get = ProbDistPot_LetterClass_U_get(...)   set = ProbDistPot_LetterClass_U_set(...)   Va   get = ProbDistPot_LetterClass_Va_get(...)   set = ProbDistPot_LetterClass_Va_set(...)   Vb   get = ProbDistPot_LetterClass_Vb_get(...)   set = ProbDistPot_LetterClass_Vb_set(...)   numAtoms   get = ProbDistPot_LetterClass_numAtoms_get(...)   set = ProbDistPot_LetterClass_numAtoms_set(...)   prStruct   get = ProbDistPot_LetterClass_prStruct_get(...)   set = ProbDistPot_LetterClass_prStruct_set(...)   rmsval   get = ProbDistPot_LetterClass_rmsval_get(...)   set = ProbDistPot_LetterClass_rmsval_set(...)   targetMap   get = ProbDistPot_LetterClass_targetMap_get(...)   set = ProbDistPot_LetterClass_targetMap_set(...)   Data and other attributes defined here: CROSS_CORRELATION = 1 DIFF = 0 __dict__ = <dictproxy object at 0x272ad70>   dictionary for instance variables (if defined) __swig_getmethods__ = {'U': <built-in function ProbDistPot_LetterClass_U_get>, 'Va': <built-in function ProbDistPot_LetterClass_Va_get>, 'Vb': <built-in function ProbDistPot_LetterClass_Vb_get>, 'numAtoms': <built-in function ProbDistPot_LetterClass_numAtoms_get>, 'prStruct': <built-in function ProbDistPot_LetterClass_prStruct_get>, 'rmsval': <built-in function ProbDistPot_LetterClass_rmsval_get>, 'targetMap': <built-in function ProbDistPot_LetterClass_targetMap_get>} __swig_setmethods__ = {'U': <built-in function ProbDistPot_LetterClass_U_set>, 'Va': <built-in function ProbDistPot_LetterClass_Va_set>, 'Vb': <built-in function ProbDistPot_LetterClass_Vb_set>, 'numAtoms': <built-in function ProbDistPot_LetterClass_numAtoms_set>, 'prStruct': <built-in function ProbDistPot_LetterClass_prStruct_set>, 'rmsval': <built-in function ProbDistPot_LetterClass_rmsval_set>, 'targetMap': <built-in function ProbDistPot_LetterClass_targetMap_set>} __weakref__ = <attribute '__weakref__' of 'ProbDistPot_LetterClass' objects>   list of weak references to the object (if defined)   class ProbDistPot_LetterClassPtr(ProbDistPot_LetterClass)           Method resolution order: ProbDistPot_LetterClassPtr ProbDistPot_LetterClass __builtin__.object Methods defined here: __init__(self, this)   Methods inherited from ProbDistPot_LetterClass: __del__(self, destroy=<built-in function delete_ProbDistPot_LetterClass>)   __getattr__ lambda self, name   __repr__(self)   __setattr__ lambda self, name, value   energyMaybeDerivs0(*args)   help(*args)   info(*args)   numRestraints(*args)   potType(*args)   rms(*args)   setPotType(*args)   simulation(*args)   violations(*args)   Properties inherited from ProbDistPot_LetterClass: U   get = ProbDistPot_LetterClass_U_get(...)   set = ProbDistPot_LetterClass_U_set(...)   Va   get = ProbDistPot_LetterClass_Va_get(...)   set = ProbDistPot_LetterClass_Va_set(...)   Vb   get = ProbDistPot_LetterClass_Vb_get(...)   set = ProbDistPot_LetterClass_Vb_set(...)   numAtoms   get = ProbDistPot_LetterClass_numAtoms_get(...)   set = ProbDistPot_LetterClass_numAtoms_set(...)   prStruct   get = ProbDistPot_LetterClass_prStruct_get(...)   set = ProbDistPot_LetterClass_prStruct_set(...)   rmsval   get = ProbDistPot_LetterClass_rmsval_get(...)   set = ProbDistPot_LetterClass_rmsval_set(...)   targetMap   get = ProbDistPot_LetterClass_targetMap_get(...)   set = ProbDistPot_LetterClass_targetMap_set(...)   Data and other attributes inherited from ProbDistPot_LetterClass: CROSS_CORRELATION = 1 DIFF = 0 __dict__ = <dictproxy object at 0x272ac90>   dictionary for instance variables (if defined) __swig_getmethods__ = {'U': <built-in function ProbDistPot_LetterClass_U_get>, 'Va': <built-in function ProbDistPot_LetterClass_Va_get>, 'Vb': <built-in function ProbDistPot_LetterClass_Vb_get>, 'numAtoms': <built-in function ProbDistPot_LetterClass_numAtoms_get>, 'prStruct': <built-in function ProbDistPot_LetterClass_prStruct_get>, 'rmsval': <built-in function ProbDistPot_LetterClass_rmsval_get>, 'targetMap': <built-in function ProbDistPot_LetterClass_targetMap_get>} __swig_setmethods__ = {'U': <built-in function ProbDistPot_LetterClass_U_set>, 'Va': <built-in function ProbDistPot_LetterClass_Va_set>, 'Vb': <built-in function ProbDistPot_LetterClass_Vb_set>, 'numAtoms': <built-in function ProbDistPot_LetterClass_numAtoms_set>, 'prStruct': <built-in function ProbDistPot_LetterClass_prStruct_set>, 'rmsval': <built-in function ProbDistPot_LetterClass_rmsval_set>, 'targetMap': <built-in function ProbDistPot_LetterClass_targetMap_set>} __weakref__ = <attribute '__weakref__' of 'ProbDistPot_LetterClass' objects>   list of weak references to the object (if defined)

Functions
		help(...)

Data
		__package__ = None pyXplorHelp = Type help() for interactive help, or help(object) for help about object.