surfD
index
surfD.py

Surf:
 
Internal class object which performs tessellation of protein surface and 
some related operations. 
Used by SurfDiff class, diffPot and relaxRatioPot potential terms.
Based on SURF programm by 
A. Varshney et al. IEEE Comput. Graphics Appl. 1994, 14, 19-25.
 
constructor: Surf(const AtomSel& selection)
 
  selection is a AtomSel object specifying the atoms to include
  when tesselating protein surface.
 
methods
 
  update_radii
  (const CDSVector<float_type>& radii) - updates constants which 
                                         are as van der Waals radii of atoms.
 
  update_atoms()                       - updates atom positions from those 
                                         currently in the Simulation.
 
  tessellate()                         - tessellates protein surface.
 
  read_in
  (const char* filename, const double& Shell_radius) 
  - service routine which reads atoms from a PDB file and adds a constant 
    shell for all atoms' radii.
 
 
SurfDiff:
 
Internal class which converts coordinates of tessellated surface into 
diffusion tensor and performs related operations. 
Used by diffPot and relaxRatioPot potential terms.
Based on ELM programm by Y. Ryabov et al. JACS 2006, 128 (48), pp 15432–15444.
 
constructor: No constructor available 
 
methods
 
  cvrm_W() - calculates weighted covariance matrix using partial linear and 
             bilinear sums ( Sum, Norm, and Sum2 ) calculates norm factors Norm_F.
 
  eig_calc( CovMat *c_vrm ) - calculates Eigen values and Eigen vectors for given 
                              covariance matrix CovMat *c_vrm.
 
  make_diffusion_tensor(eigS *eig, double TmP) - calculates diffusion tensor for 
      given set of Eigen values and Eigen vectors eigS *eig 
      and given value of temperature.
 
  ellipt_int_simp(const double& a_x_2, 
                          const double& a_y_2, 
                          const double& a_z_2, 
                          const double& dc ) - calculates elliptical integrals 
                                            using Simpson's quadratures. 
 
  calc_Tmp(double TmP) - calculates the factor taking into account the 
      temperature dependency of water viscosity for protein thumbing in water
      approximation from: 
      Weast, R.C. Handbook of Chemistry and Physics, 59th ed. 
      CRC press West Palm Beach, FL 1978
 
      dT=TmP-273;
 
      eta_t=(1e-3)*(1.7753-0.0565*(dT)+1.0751e-3*(dT*dT)-9.2222e-6*(dT*dT*dT));
 
  calc_sum(int a_, int b_, int k, 
           double a_m, double b_m ) - calculates a part of covariance matrix sum 
                                     which corresponds to a particular atom # k.
 
  calc_deriv_Per_x_Per_y_Per_z_on_Ax_Ay_Az(const double& Ax, 
                                         const double& Ay, 
                                         const double& Az, 
                                         const double& P, 
                                         const double& Q, 
                                         const double& R ) - 
      calculates partial derivatives of Per_x Per_y and Per_z with respect to 
      the values of ellipsoid semi-axes squares Ax, Ay, and Az.
 
  calc_cov_dif(int C, int k, int A, int B, 
                             CovMat *c_vrm ) - calculates particular derivative with 
      respect to the C coordinate of atom # k for the components of covariance matrix 
      with indexes A and B.
 
 
  calculate_chi2( double TmpF, Mat3 target ) - calculates Chi2 for the energy of
                                               diffPot potential.
 
  calculate_energy_and_derivatives(double TmpF, 
                                       Mat3 target, 
                                       double sc_l, 
                                       DerivList& derivs, 
                                       const AtomSel& sel,
                                       double range_Tmp,
                                       double current_temperature,
                                       Atom Xa, Atom Ya, Atom Oa) - Calculates energy 
      and derivatives for diffPot potential.
 
  current_diffusion_tensor( double TmpF ) - calculates diffusion tensor for given TmpF.
 
  calculate_chi2_eigen_values( double TmpF, Mat3 target ) - calculates minimal Chi2 
      based on differences of eigen values only.
 
  dTmpF_dT( double TmP ) - calculates the partial difference of the temperature factor 
                           with respect to the temperature value
 
 
 
 
# This file was created automatically by SWIG.
# Don't modify this file, modify the SWIG interface instead.
# This file is compatible with both classic and new-style classes.

 
Classes
       
__builtin__.object
Big_Point
Big_PointPtr
CDSList_SurfacePoint
CDSList_SurfacePointPtr
CDSList_SurfacePointOUT
CDSList_SurfacePointOUTPtr
CovMat
CovMatPtr
CovMat_Gradients
CovMat_GradientsPtr
Gp_Atom
Gp_AtomPtr
Surf
SurfPtr
SurfDiff
SurfDiffPtr
Surf_out
Surf_outPtr
SurfacePoint
SurfacePointPtr
SurfacePointOUT
SurfacePointOUTPtr
Torus
TorusPtr
V_ector
V_ectorPtr
VertexType
VertexTypePtr
eigS
eigSPtr
redge
redgePtr
rface
rfacePtr
rvertex
rvertexPtr
tedge
tedgePtr
tface
tfacePtr
tvertex
tvertexPtr

 
class Big_Point(__builtin__.object)
   
 

 
  Methods defined here:
__del__(self, destroy=<built-in function delete_Big_Point>)

 
__getattr__ lambda self, name

 
__init__(self, *args)

 
__repr__(self)

 
__setattr__ lambda self, name, value

 

Properties defined here:
tes_dir

 
get = Big_Point_tes_dir_get(...)

 
set = Big_Point_tes_dir_set(...)

 
vt

 
get = Big_Point_vt_get(...)

 
set = Big_Point_vt_set(...)

 

Data and other attributes defined here:
__dict__ = <dictproxy object at 0x25b3868>

 
dictionary for instance variables (if defined)
__swig_getmethods__ = {'tes_dir': <built-in function Big_Point_tes_dir_get>, 'vt': <built-in function Big_Point_vt_get>}
__swig_setmethods__ = {'tes_dir': <built-in function Big_Point_tes_dir_set>, 'vt': <built-in function Big_Point_vt_set>}
__weakref__ = <attribute '__weakref__' of 'Big_Point' objects>

 
list of weak references to the object (if defined)

 
class Big_PointPtr(Big_Point)
   
 

 
 
Method resolution order:
Big_PointPtr
Big_Point
__builtin__.object

Methods defined here:
__init__(self, this)

 

Methods inherited from Big_Point:
__del__(self, destroy=<built-in function delete_Big_Point>)

 
__getattr__ lambda self, name

 
__repr__(self)

 
__setattr__ lambda self, name, value

 

Properties inherited from Big_Point:
tes_dir

 
get = Big_Point_tes_dir_get(...)

 
set = Big_Point_tes_dir_set(...)

 
vt

 
get = Big_Point_vt_get(...)

 
set = Big_Point_vt_set(...)

 

Data and other attributes inherited from Big_Point:
__dict__ = <dictproxy object at 0x25b38a0>

 
dictionary for instance variables (if defined)
__swig_getmethods__ = {'tes_dir': <built-in function Big_Point_tes_dir_get>, 'vt': <built-in function Big_Point_vt_get>}
__swig_setmethods__ = {'tes_dir': <built-in function Big_Point_tes_dir_set>, 'vt': <built-in function Big_Point_vt_set>}
__weakref__ = <attribute '__weakref__' of 'Big_Point' objects>

 
list of weak references to the object (if defined)

 
class CDSList_SurfacePoint(__builtin__.object)
   
 

 
  Methods defined here:
__del__(self, destroy=<built-in function delete_CDSList_SurfacePoint>)

 
__delitem__(*args)

 
__getattr__ lambda self, name

 
__getitem__(*args)

 
__getslice__(*args)

 
__init__(self, *args)

 
__len__(*args)

 
__repr__(self)

 
__setattr__ lambda self, name, value

 
__setitem__(*args)

 
help(*args)

 

Data and other attributes defined here:
__dict__ = <dictproxy object at 0x25b3868>

 
dictionary for instance variables (if defined)
__swig_getmethods__ = {}
__swig_setmethods__ = {}
__weakref__ = <attribute '__weakref__' of 'CDSList_SurfacePoint' objects>

 
list of weak references to the object (if defined)

 
class CDSList_SurfacePointOUT(__builtin__.object)
   
 

 
  Methods defined here:
__del__(self, destroy=<built-in function delete_CDSList_SurfacePointOUT>)

 
__delitem__(*args)

 
__getattr__ lambda self, name

 
__getitem__(*args)

 
__getslice__(*args)

 
__init__(self, *args)

 
__len__(*args)

 
__repr__(self)

 
__setattr__ lambda self, name, value

 
__setitem__(*args)

 
help(*args)

 

Data and other attributes defined here:
__dict__ = <dictproxy object at 0x25b3948>

 
dictionary for instance variables (if defined)
__swig_getmethods__ = {}
__swig_setmethods__ = {}
__weakref__ = <attribute '__weakref__' of 'CDSList_SurfacePointOUT' objects>

 
list of weak references to the object (if defined)

 
class CDSList_SurfacePointOUTPtr(CDSList_SurfacePointOUT)
   
 

 
 
Method resolution order:
CDSList_SurfacePointOUTPtr
CDSList_SurfacePointOUT
__builtin__.object

Methods defined here:
__init__(self, this)

 

Methods inherited from CDSList_SurfacePointOUT:
__del__(self, destroy=<built-in function delete_CDSList_SurfacePointOUT>)

 
__delitem__(*args)

 
__getattr__ lambda self, name

 
__getitem__(*args)

 
__getslice__(*args)

 
__len__(*args)

 
__repr__(self)

 
__setattr__ lambda self, name, value

 
__setitem__(*args)

 
help(*args)

 

Data and other attributes inherited from CDSList_SurfacePointOUT:
__dict__ = <dictproxy object at 0x25b3600>

 
dictionary for instance variables (if defined)
__swig_getmethods__ = {}
__swig_setmethods__ = {}
__weakref__ = <attribute '__weakref__' of 'CDSList_SurfacePointOUT' objects>

 
list of weak references to the object (if defined)

 
class CDSList_SurfacePointPtr(CDSList_SurfacePoint)
   
 

 
 
Method resolution order:
CDSList_SurfacePointPtr
CDSList_SurfacePoint
__builtin__.object

Methods defined here:
__init__(self, this)

 

Methods inherited from CDSList_SurfacePoint:
__del__(self, destroy=<built-in function delete_CDSList_SurfacePoint>)

 
__delitem__(*args)

 
__getattr__ lambda self, name

 
__getitem__(*args)

 
__getslice__(*args)

 
__len__(*args)

 
__repr__(self)

 
__setattr__ lambda self, name, value

 
__setitem__(*args)

 
help(*args)

 

Data and other attributes inherited from CDSList_SurfacePoint:
__dict__ = <dictproxy object at 0x25b3868>

 
dictionary for instance variables (if defined)
__swig_getmethods__ = {}
__swig_setmethods__ = {}
__weakref__ = <attribute '__weakref__' of 'CDSList_SurfacePoint' objects>

 
list of weak references to the object (if defined)

 
class CovMat(__builtin__.object)
   
 

 
  Methods defined here:
__del__(self, destroy=<built-in function delete_CovMat>)

 
__getattr__ lambda self, name

 
__init__(self, *args)

 
__repr__(self)

 
__setattr__ lambda self, name, value

 

Properties defined here:
Cm

 
get = CovMat_Cm_get(...)

 
set = CovMat_Cm_set(...)

 
Norm_all

 
get = CovMat_Norm_all_get(...)

 
set = CovMat_Norm_all_set(...)

 
Sum_all

 
get = CovMat_Sum_all_get(...)

 
set = CovMat_Sum_all_set(...)

 
XX

 
get = CovMat_XX_get(...)

 
set = CovMat_XX_set(...)

 
XY

 
get = CovMat_XY_get(...)

 
set = CovMat_XY_set(...)

 
XZ

 
get = CovMat_XZ_get(...)

 
set = CovMat_XZ_set(...)

 
YY

 
get = CovMat_YY_get(...)

 
set = CovMat_YY_set(...)

 
YZ

 
get = CovMat_YZ_get(...)

 
set = CovMat_YZ_set(...)

 
ZZ

 
get = CovMat_ZZ_get(...)

 
set = CovMat_ZZ_set(...)

 

Data and other attributes defined here:
__dict__ = <dictproxy object at 0x25b3ad0>

 
dictionary for instance variables (if defined)
__swig_getmethods__ = {'Cm': <built-in function CovMat_Cm_get>, 'Norm_all': <built-in function CovMat_Norm_all_get>, 'Sum_all': <built-in function CovMat_Sum_all_get>, 'XX': <built-in function CovMat_XX_get>, 'XY': <built-in function CovMat_XY_get>, 'XZ': <built-in function CovMat_XZ_get>, 'YY': <built-in function CovMat_YY_get>, 'YZ': <built-in function CovMat_YZ_get>, 'ZZ': <built-in function CovMat_ZZ_get>}
__swig_setmethods__ = {'Cm': <built-in function CovMat_Cm_set>, 'Norm_all': <built-in function CovMat_Norm_all_set>, 'Sum_all': <built-in function CovMat_Sum_all_set>, 'XX': <built-in function CovMat_XX_set>, 'XY': <built-in function CovMat_XY_set>, 'XZ': <built-in function CovMat_XZ_set>, 'YY': <built-in function CovMat_YY_set>, 'YZ': <built-in function CovMat_YZ_set>, 'ZZ': <built-in function CovMat_ZZ_set>}
__weakref__ = <attribute '__weakref__' of 'CovMat' objects>

 
list of weak references to the object (if defined)

 
class CovMatPtr(CovMat)
   
 

 
 
Method resolution order:
CovMatPtr
CovMat
__builtin__.object

Methods defined here:
__init__(self, this)

 

Methods inherited from CovMat:
__del__(self, destroy=<built-in function delete_CovMat>)

 
__getattr__ lambda self, name

 
__repr__(self)

 
__setattr__ lambda self, name, value

 

Properties inherited from CovMat:
Cm

 
get = CovMat_Cm_get(...)

 
set = CovMat_Cm_set(...)

 
Norm_all

 
get = CovMat_Norm_all_get(...)

 
set = CovMat_Norm_all_set(...)

 
Sum_all

 
get = CovMat_Sum_all_get(...)

 
set = CovMat_Sum_all_set(...)

 
XX

 
get = CovMat_XX_get(...)

 
set = CovMat_XX_set(...)

 
XY

 
get = CovMat_XY_get(...)

 
set = CovMat_XY_set(...)

 
XZ

 
get = CovMat_XZ_get(...)

 
set = CovMat_XZ_set(...)

 
YY

 
get = CovMat_YY_get(...)

 
set = CovMat_YY_set(...)

 
YZ

 
get = CovMat_YZ_get(...)

 
set = CovMat_YZ_set(...)

 
ZZ

 
get = CovMat_ZZ_get(...)

 
set = CovMat_ZZ_set(...)

 

Data and other attributes inherited from CovMat:
__dict__ = <dictproxy object at 0x25b3a28>

 
dictionary for instance variables (if defined)
__swig_getmethods__ = {'Cm': <built-in function CovMat_Cm_get>, 'Norm_all': <built-in function CovMat_Norm_all_get>, 'Sum_all': <built-in function CovMat_Sum_all_get>, 'XX': <built-in function CovMat_XX_get>, 'XY': <built-in function CovMat_XY_get>, 'XZ': <built-in function CovMat_XZ_get>, 'YY': <built-in function CovMat_YY_get>, 'YZ': <built-in function CovMat_YZ_get>, 'ZZ': <built-in function CovMat_ZZ_get>}
__swig_setmethods__ = {'Cm': <built-in function CovMat_Cm_set>, 'Norm_all': <built-in function CovMat_Norm_all_set>, 'Sum_all': <built-in function CovMat_Sum_all_set>, 'XX': <built-in function CovMat_XX_set>, 'XY': <built-in function CovMat_XY_set>, 'XZ': <built-in function CovMat_XZ_set>, 'YY': <built-in function CovMat_YY_set>, 'YZ': <built-in function CovMat_YZ_set>, 'ZZ': <built-in function CovMat_ZZ_set>}
__weakref__ = <attribute '__weakref__' of 'CovMat' objects>

 
list of weak references to the object (if defined)

 
class CovMat_Gradients(__builtin__.object)
   
 

 
  Methods defined here:
__del__(self, destroy=<built-in function delete_CovMat_Gradients>)

 
__getattr__ lambda self, name

 
__init__(self, *args)

 
__repr__(self)

 
__setattr__ lambda self, name, value

 

Properties defined here:
dX_Diff

 
get = CovMat_Gradients_dX_Diff_get(...)

 
set = CovMat_Gradients_dX_Diff_set(...)

 
dX_Ecvrm

 
get = CovMat_Gradients_dX_Ecvrm_get(...)

 
set = CovMat_Gradients_dX_Ecvrm_set(...)

 
dX_mtrx

 
get = CovMat_Gradients_dX_mtrx_get(...)

 
set = CovMat_Gradients_dX_mtrx_set(...)

 
dX_mtrxV

 
get = CovMat_Gradients_dX_mtrxV_get(...)

 
set = CovMat_Gradients_dX_mtrxV_set(...)

 
dY_Diff

 
get = CovMat_Gradients_dY_Diff_get(...)

 
set = CovMat_Gradients_dY_Diff_set(...)

 
dY_Ecvrm

 
get = CovMat_Gradients_dY_Ecvrm_get(...)

 
set = CovMat_Gradients_dY_Ecvrm_set(...)

 
dY_mtrx

 
get = CovMat_Gradients_dY_mtrx_get(...)

 
set = CovMat_Gradients_dY_mtrx_set(...)

 
dY_mtrxV

 
get = CovMat_Gradients_dY_mtrxV_get(...)

 
set = CovMat_Gradients_dY_mtrxV_set(...)

 
dZ_Diff

 
get = CovMat_Gradients_dZ_Diff_get(...)

 
set = CovMat_Gradients_dZ_Diff_set(...)

 
dZ_Ecvrm

 
get = CovMat_Gradients_dZ_Ecvrm_get(...)

 
set = CovMat_Gradients_dZ_Ecvrm_set(...)

 
dZ_mtrx

 
get = CovMat_Gradients_dZ_mtrx_get(...)

 
set = CovMat_Gradients_dZ_mtrx_set(...)

 
dZ_mtrxV

 
get = CovMat_Gradients_dZ_mtrxV_get(...)

 
set = CovMat_Gradients_dZ_mtrxV_set(...)

 

Data and other attributes defined here:
__dict__ = <dictproxy object at 0x25b3b78>

 
dictionary for instance variables (if defined)
__swig_getmethods__ = {'dX_Diff': <built-in function CovMat_Gradients_dX_Diff_get>, 'dX_Ecvrm': <built-in function CovMat_Gradients_dX_Ecvrm_get>, 'dX_mtrx': <built-in function CovMat_Gradients_dX_mtrx_get>, 'dX_mtrxV': <built-in function CovMat_Gradients_dX_mtrxV_get>, 'dY_Diff': <built-in function CovMat_Gradients_dY_Diff_get>, 'dY_Ecvrm': <built-in function CovMat_Gradients_dY_Ecvrm_get>, 'dY_mtrx': <built-in function CovMat_Gradients_dY_mtrx_get>, 'dY_mtrxV': <built-in function CovMat_Gradients_dY_mtrxV_get>, 'dZ_Diff': <built-in function CovMat_Gradients_dZ_Diff_get>, 'dZ_Ecvrm': <built-in function CovMat_Gradients_dZ_Ecvrm_get>, ...}
__swig_setmethods__ = {'dX_Diff': <built-in function CovMat_Gradients_dX_Diff_set>, 'dX_Ecvrm': <built-in function CovMat_Gradients_dX_Ecvrm_set>, 'dX_mtrx': <built-in function CovMat_Gradients_dX_mtrx_set>, 'dX_mtrxV': <built-in function CovMat_Gradients_dX_mtrxV_set>, 'dY_Diff': <built-in function CovMat_Gradients_dY_Diff_set>, 'dY_Ecvrm': <built-in function CovMat_Gradients_dY_Ecvrm_set>, 'dY_mtrx': <built-in function CovMat_Gradients_dY_mtrx_set>, 'dY_mtrxV': <built-in function CovMat_Gradients_dY_mtrxV_set>, 'dZ_Diff': <built-in function CovMat_Gradients_dZ_Diff_set>, 'dZ_Ecvrm': <built-in function CovMat_Gradients_dZ_Ecvrm_set>, ...}
__weakref__ = <attribute '__weakref__' of 'CovMat_Gradients' objects>

 
list of weak references to the object (if defined)

 
class CovMat_GradientsPtr(CovMat_Gradients)
   
 

 
 
Method resolution order:
CovMat_GradientsPtr
CovMat_Gradients
__builtin__.object

Methods defined here:
__init__(self, this)

 

Methods inherited from CovMat_Gradients:
__del__(self, destroy=<built-in function delete_CovMat_Gradients>)

 
__getattr__ lambda self, name

 
__repr__(self)

 
__setattr__ lambda self, name, value

 

Properties inherited from CovMat_Gradients:
dX_Diff

 
get = CovMat_Gradients_dX_Diff_get(...)

 
set = CovMat_Gradients_dX_Diff_set(...)

 
dX_Ecvrm

 
get = CovMat_Gradients_dX_Ecvrm_get(...)

 
set = CovMat_Gradients_dX_Ecvrm_set(...)

 
dX_mtrx

 
get = CovMat_Gradients_dX_mtrx_get(...)

 
set = CovMat_Gradients_dX_mtrx_set(...)

 
dX_mtrxV

 
get = CovMat_Gradients_dX_mtrxV_get(...)

 
set = CovMat_Gradients_dX_mtrxV_set(...)

 
dY_Diff

 
get = CovMat_Gradients_dY_Diff_get(...)

 
set = CovMat_Gradients_dY_Diff_set(...)

 
dY_Ecvrm

 
get = CovMat_Gradients_dY_Ecvrm_get(...)

 
set = CovMat_Gradients_dY_Ecvrm_set(...)

 
dY_mtrx

 
get = CovMat_Gradients_dY_mtrx_get(...)

 
set = CovMat_Gradients_dY_mtrx_set(...)

 
dY_mtrxV

 
get = CovMat_Gradients_dY_mtrxV_get(...)

 
set = CovMat_Gradients_dY_mtrxV_set(...)

 
dZ_Diff

 
get = CovMat_Gradients_dZ_Diff_get(...)

 
set = CovMat_Gradients_dZ_Diff_set(...)

 
dZ_Ecvrm

 
get = CovMat_Gradients_dZ_Ecvrm_get(...)

 
set = CovMat_Gradients_dZ_Ecvrm_set(...)

 
dZ_mtrx

 
get = CovMat_Gradients_dZ_mtrx_get(...)

 
set = CovMat_Gradients_dZ_mtrx_set(...)

 
dZ_mtrxV

 
get = CovMat_Gradients_dZ_mtrxV_get(...)

 
set = CovMat_Gradients_dZ_mtrxV_set(...)

 

Data and other attributes inherited from CovMat_Gradients:
__dict__ = <dictproxy object at 0x25b39f0>

 
dictionary for instance variables (if defined)
__swig_getmethods__ = {'dX_Diff': <built-in function CovMat_Gradients_dX_Diff_get>, 'dX_Ecvrm': <built-in function CovMat_Gradients_dX_Ecvrm_get>, 'dX_mtrx': <built-in function CovMat_Gradients_dX_mtrx_get>, 'dX_mtrxV': <built-in function CovMat_Gradients_dX_mtrxV_get>, 'dY_Diff': <built-in function CovMat_Gradients_dY_Diff_get>, 'dY_Ecvrm': <built-in function CovMat_Gradients_dY_Ecvrm_get>, 'dY_mtrx': <built-in function CovMat_Gradients_dY_mtrx_get>, 'dY_mtrxV': <built-in function CovMat_Gradients_dY_mtrxV_get>, 'dZ_Diff': <built-in function CovMat_Gradients_dZ_Diff_get>, 'dZ_Ecvrm': <built-in function CovMat_Gradients_dZ_Ecvrm_get>, ...}
__swig_setmethods__ = {'dX_Diff': <built-in function CovMat_Gradients_dX_Diff_set>, 'dX_Ecvrm': <built-in function CovMat_Gradients_dX_Ecvrm_set>, 'dX_mtrx': <built-in function CovMat_Gradients_dX_mtrx_set>, 'dX_mtrxV': <built-in function CovMat_Gradients_dX_mtrxV_set>, 'dY_Diff': <built-in function CovMat_Gradients_dY_Diff_set>, 'dY_Ecvrm': <built-in function CovMat_Gradients_dY_Ecvrm_set>, 'dY_mtrx': <built-in function CovMat_Gradients_dY_mtrx_set>, 'dY_mtrxV': <built-in function CovMat_Gradients_dY_mtrxV_set>, 'dZ_Diff': <built-in function CovMat_Gradients_dZ_Diff_set>, 'dZ_Ecvrm': <built-in function CovMat_Gradients_dZ_Ecvrm_set>, ...}
__weakref__ = <attribute '__weakref__' of 'CovMat_Gradients' objects>

 
list of weak references to the object (if defined)

 
class Gp_Atom(__builtin__.object)
   
 

 
  Methods defined here:
__del__(self, destroy=<built-in function delete_Gp_Atom>)

 
__getattr__ lambda self, name

 
__init__(self, *args)

 
__repr__(self)

 
__setattr__ lambda self, name, value

 

Properties defined here:
NmBr

 
get = Gp_Atom_NmBr_get(...)

 
set = Gp_Atom_NmBr_set(...)

 
boundary

 
get = Gp_Atom_boundary_get(...)

 
set = Gp_Atom_boundary_set(...)

 
center

 
get = Gp_Atom_center_get(...)

 
set = Gp_Atom_center_set(...)

 
num_cons

 
get = Gp_Atom_num_cons_get(...)

 
set = Gp_Atom_num_cons_set(...)

 
radius

 
get = Gp_Atom_radius_get(...)

 
set = Gp_Atom_radius_set(...)

 
tes_origin

 
get = Gp_Atom_tes_origin_get(...)

 
set = Gp_Atom_tes_origin_set(...)

 
type

 
get = Gp_Atom_type_get(...)

 
set = Gp_Atom_type_set(...)

 

Data and other attributes defined here:
__dict__ = <dictproxy object at 0x25b3b40>

 
dictionary for instance variables (if defined)
__swig_getmethods__ = {'NmBr': <built-in function Gp_Atom_NmBr_get>, 'boundary': <built-in function Gp_Atom_boundary_get>, 'center': <built-in function Gp_Atom_center_get>, 'num_cons': <built-in function Gp_Atom_num_cons_get>, 'radius': <built-in function Gp_Atom_radius_get>, 'tes_origin': <built-in function Gp_Atom_tes_origin_get>, 'type': <built-in function Gp_Atom_type_get>}
__swig_setmethods__ = {'NmBr': <built-in function Gp_Atom_NmBr_set>, 'boundary': <built-in function Gp_Atom_boundary_set>, 'center': <built-in function Gp_Atom_center_set>, 'num_cons': <built-in function Gp_Atom_num_cons_set>, 'radius': <built-in function Gp_Atom_radius_set>, 'tes_origin': <built-in function Gp_Atom_tes_origin_set>, 'type': <built-in function Gp_Atom_type_set>}
__weakref__ = <attribute '__weakref__' of 'Gp_Atom' objects>

 
list of weak references to the object (if defined)

 
class Gp_AtomPtr(Gp_Atom)
   
 

 
 
Method resolution order:
Gp_AtomPtr
Gp_Atom
__builtin__.object

Methods defined here:
__init__(self, this)

 

Methods inherited from Gp_Atom:
__del__(self, destroy=<built-in function delete_Gp_Atom>)

 
__getattr__ lambda self, name

 
__repr__(self)

 
__setattr__ lambda self, name, value

 

Properties inherited from Gp_Atom:
NmBr

 
get = Gp_Atom_NmBr_get(...)

 
set = Gp_Atom_NmBr_set(...)

 
boundary

 
get = Gp_Atom_boundary_get(...)

 
set = Gp_Atom_boundary_set(...)

 
center

 
get = Gp_Atom_center_get(...)

 
set = Gp_Atom_center_set(...)

 
num_cons

 
get = Gp_Atom_num_cons_get(...)

 
set = Gp_Atom_num_cons_set(...)

 
radius

 
get = Gp_Atom_radius_get(...)

 
set = Gp_Atom_radius_set(...)

 
tes_origin

 
get = Gp_Atom_tes_origin_get(...)

 
set = Gp_Atom_tes_origin_set(...)

 
type

 
get = Gp_Atom_type_get(...)

 
set = Gp_Atom_type_set(...)

 

Data and other attributes inherited from Gp_Atom:
__dict__ = <dictproxy object at 0x25b37f8>

 
dictionary for instance variables (if defined)
__swig_getmethods__ = {'NmBr': <built-in function Gp_Atom_NmBr_get>, 'boundary': <built-in function Gp_Atom_boundary_get>, 'center': <built-in function Gp_Atom_center_get>, 'num_cons': <built-in function Gp_Atom_num_cons_get>, 'radius': <built-in function Gp_Atom_radius_get>, 'tes_origin': <built-in function Gp_Atom_tes_origin_get>, 'type': <built-in function Gp_Atom_type_get>}
__swig_setmethods__ = {'NmBr': <built-in function Gp_Atom_NmBr_set>, 'boundary': <built-in function Gp_Atom_boundary_set>, 'center': <built-in function Gp_Atom_center_set>, 'num_cons': <built-in function Gp_Atom_num_cons_set>, 'radius': <built-in function Gp_Atom_radius_set>, 'tes_origin': <built-in function Gp_Atom_tes_origin_set>, 'type': <built-in function Gp_Atom_type_set>}
__weakref__ = <attribute '__weakref__' of 'Gp_Atom' objects>

 
list of weak references to the object (if defined)

 
class Surf(__builtin__.object)
   
 

 
  Methods defined here:
__del__(self, destroy=<built-in function delete_Surf>)

 
__getattr__ lambda self, name

 
__init__(self, *args)

 
__repr__(self)

 
__setattr__ lambda self, name, value

 
all_verts_in_sphere(*args)

 
atomSel(*args)

 
calc_sums_out_dat(*args)

 
check_duplicates(*args)

 
compute_bounding_tetra(*args)

 
compute_components(*args)

 
compute_extents(*args)

 
compute_neighbors(*args)

 
compute_planes(*args)

 
dump_atoms(*args)

 
dump_out_dat(*args)

 
find_components(*args)

 
find_origin(*args)

 
find_sol_cons(*args)

 
find_tes_origin(*args)

 
gen_component(*args)

 
get_torus_elt(*args)

 
help(*args)

 
init_and_compute(*args)

 
int_out_dat(*args)

 
linear_prog(*args)

 
mark_duplicates(*args)

 
move_atoms(*args)

 
quick_sort_planes(*args)

 
re_tessellation(*args)

 
read_in(*args)

 
read_in_atoms(*args)

 
remove_duplicates(*args)

 
tessellate(*args)

 
transform_and_add_extents(*args)

 
update_atoms(*args)

 
update_radii(*args)

 

Properties defined here:
Atom_Grid

 
get = Surf_Atom_Grid_get(...)

 
set = Surf_Atom_Grid_set(...)

 
Bounding_Tetra

 
get = Surf_Bounding_Tetra_get(...)

 
set = Surf_Bounding_Tetra_set(...)

 
Checks_On

 
get = Surf_Checks_On_get(...)

 
set = Surf_Checks_On_set(...)

 
Constraints

 
get = Surf_Constraints_get(...)

 
set = Surf_Constraints_set(...)

 
Current_atom

 
get = Surf_Current_atom_get(...)

 
set = Surf_Current_atom_set(...)

 
Extents

 
get = Surf_Extents_get(...)

 
set = Surf_Extents_set(...)

 
Max_Radius

 
get = Surf_Max_Radius_get(...)

 
set = Surf_Max_Radius_set(...)

 
Max_Tess_Len

 
get = Surf_Max_Tess_Len_get(...)

 
set = Surf_Max_Tess_Len_set(...)

 
Max_Tess_Len_Sq

 
get = Surf_Max_Tess_Len_Sq_get(...)

 
set = Surf_Max_Tess_Len_Sq_set(...)

 
Max_cons

 
get = Surf_Max_cons_get(...)

 
set = Surf_Max_cons_set(...)

 
Neighbor_list

 
get = Surf_Neighbor_list_get(...)

 
set = Surf_Neighbor_list_set(...)

 
New_Origin

 
get = Surf_New_Origin_get(...)

 
set = Surf_New_Origin_set(...)

 
Num_Voxels

 
get = Surf_Num_Voxels_get(...)

 
set = Surf_Num_Voxels_set(...)

 
Num_atoms

 
get = Surf_Num_atoms_get(...)

 
set = Surf_Num_atoms_set(...)

 
Num_p

 
get = Surf_Num_p_get(...)

 
set = Surf_Num_p_set(...)

 
Num_polys

 
get = Surf_Num_polys_get(...)

 
set = Surf_Num_polys_set(...)

 
Probe_radius

 
get = Surf_Probe_radius_get(...)

 
set = Surf_Probe_radius_set(...)

 
SAsum

 
get = Surf_SAsum_get(...)

 
set = Surf_SAsum_set(...)

 
Tot_cons

 
get = Surf_Tot_cons_get(...)

 
set = Surf_Tot_cons_set(...)

 
Voxel_Side

 
get = Surf_Voxel_Side_get(...)

 
set = Surf_Voxel_Side_set(...)

 
atomSel_

 
get = Surf_atomSel__get(...)

 
set = Surf_atomSel__set(...)

 
atom_type

 
get = Surf_atom_type_get(...)

 
set = Surf_atom_type_set(...)

 
atoms

 
get = Surf_atoms_get(...)

 
set = Surf_atoms_set(...)

 
out_spt

 
get = Surf_out_spt_get(...)

 
set = Surf_out_spt_set(...)

 
temp_cons

 
get = Surf_temp_cons_get(...)

 
set = Surf_temp_cons_set(...)

 

Data and other attributes defined here:
__dict__ = <dictproxy object at 0x25b3fd8>

 
dictionary for instance variables (if defined)
__swig_getmethods__ = {'Atom_Grid': <built-in function Surf_Atom_Grid_get>, 'Bounding_Tetra': <built-in function Surf_Bounding_Tetra_get>, 'Checks_On': <built-in function Surf_Checks_On_get>, 'Constraints': <built-in function Surf_Constraints_get>, 'Current_atom': <built-in function Surf_Current_atom_get>, 'Extents': <built-in function Surf_Extents_get>, 'Max_Radius': <built-in function Surf_Max_Radius_get>, 'Max_Tess_Len': <built-in function Surf_Max_Tess_Len_get>, 'Max_Tess_Len_Sq': <built-in function Surf_Max_Tess_Len_Sq_get>, 'Max_cons': <built-in function Surf_Max_cons_get>, ...}
__swig_setmethods__ = {'Atom_Grid': <built-in function Surf_Atom_Grid_set>, 'Bounding_Tetra': <built-in function Surf_Bounding_Tetra_set>, 'Checks_On': <built-in function Surf_Checks_On_set>, 'Constraints': <built-in function Surf_Constraints_set>, 'Current_atom': <built-in function Surf_Current_atom_set>, 'Extents': <built-in function Surf_Extents_set>, 'Max_Radius': <built-in function Surf_Max_Radius_set>, 'Max_Tess_Len': <built-in function Surf_Max_Tess_Len_set>, 'Max_Tess_Len_Sq': <built-in function Surf_Max_Tess_Len_Sq_set>, 'Max_cons': <built-in function Surf_Max_cons_set>, ...}
__weakref__ = <attribute '__weakref__' of 'Surf' objects>

 
list of weak references to the object (if defined)

 
class SurfDiff(__builtin__.object)
   
 

 
  Methods defined here:
__del__(self, destroy=<built-in function delete_SurfDiff>)

 
__getattr__ lambda self, name

 
__init__(self, *args)

 
__repr__(self)

 
__setattr__ lambda self, name, value

 
bra_Mat_ket(*args)

 
calc_Tmp(*args)

 
calc_cov_dif(*args)

 
calc_deriv_Per_x_Per_y_Per_z_on_Ax_Ay_Az(*args)

 
calc_sum(*args)

 
calculate_chi2(*args)

 
calculate_chi2_eigen_values(*args)

 
calculate_derivatives(*args)

 
calculate_energy_and_derivatives(*args)

 
current_diffusion_tensor(*args)

 
cvrm_W(*args)

 
dTmpF_dT(*args)

 
dump_direct_calculations_derivativs(*args)

 
eig_calc(*args)

 
element_prod(*args)

 
ellipt_int_simp(*args)

 
help(*args)

 
make_diffusion_tensor(*args)

 
num_calc_deriv_P_Q_R_on_Ax_Ay_Az(*args)

 
num_calc_deriv_Per_XYZ_on_Ax_Ay_Az(*args)

 

Static methods defined here:
surf_leaks_test = SurfDiff_surf_leaks_test(...)

 

Data and other attributes defined here:
__dict__ = <dictproxy object at 0x25b3cc8>

 
dictionary for instance variables (if defined)
__swig_getmethods__ = {'surf_leaks_test': <function <lambda> at 0x25b05f0>}
__swig_setmethods__ = {}
__weakref__ = <attribute '__weakref__' of 'SurfDiff' objects>

 
list of weak references to the object (if defined)

 
class SurfDiffPtr(SurfDiff)
   
 

 
 
Method resolution order:
SurfDiffPtr
SurfDiff
__builtin__.object

Methods defined here:
__init__(self, this)

 

Methods inherited from SurfDiff:
__del__(self, destroy=<built-in function delete_SurfDiff>)

 
__getattr__ lambda self, name

 
__repr__(self)

 
__setattr__ lambda self, name, value

 
bra_Mat_ket(*args)

 
calc_Tmp(*args)

 
calc_cov_dif(*args)

 
calc_deriv_Per_x_Per_y_Per_z_on_Ax_Ay_Az(*args)

 
calc_sum(*args)

 
calculate_chi2(*args)

 
calculate_chi2_eigen_values(*args)

 
calculate_derivatives(*args)

 
calculate_energy_and_derivatives(*args)

 
current_diffusion_tensor(*args)

 
cvrm_W(*args)

 
dTmpF_dT(*args)

 
dump_direct_calculations_derivativs(*args)

 
eig_calc(*args)

 
element_prod(*args)

 
ellipt_int_simp(*args)

 
help(*args)

 
make_diffusion_tensor(*args)

 
num_calc_deriv_P_Q_R_on_Ax_Ay_Az(*args)

 
num_calc_deriv_Per_XYZ_on_Ax_Ay_Az(*args)

 

Static methods inherited from SurfDiff:
surf_leaks_test = SurfDiff_surf_leaks_test(...)

 

Data and other attributes inherited from SurfDiff:
__dict__ = <dictproxy object at 0x25b3ec0>

 
dictionary for instance variables (if defined)
__swig_getmethods__ = {'surf_leaks_test': <function <lambda> at 0x25b05f0>}
__swig_setmethods__ = {}
__weakref__ = <attribute '__weakref__' of 'SurfDiff' objects>

 
list of weak references to the object (if defined)

 
class SurfPtr(Surf)
   
 

 
 
Method resolution order:
SurfPtr
Surf
__builtin__.object

Methods defined here:
__init__(self, this)

 

Methods inherited from Surf:
__del__(self, destroy=<built-in function delete_Surf>)

 
__getattr__ lambda self, name

 
__repr__(self)

 
__setattr__ lambda self, name, value

 
all_verts_in_sphere(*args)

 
atomSel(*args)

 
calc_sums_out_dat(*args)

 
check_duplicates(*args)

 
compute_bounding_tetra(*args)

 
compute_components(*args)

 
compute_extents(*args)

 
compute_neighbors(*args)

 
compute_planes(*args)

 
dump_atoms(*args)

 
dump_out_dat(*args)

 
find_components(*args)

 
find_origin(*args)

 
find_sol_cons(*args)

 
find_tes_origin(*args)

 
gen_component(*args)

 
get_torus_elt(*args)

 
help(*args)

 
init_and_compute(*args)

 
int_out_dat(*args)

 
linear_prog(*args)

 
mark_duplicates(*args)

 
move_atoms(*args)

 
quick_sort_planes(*args)

 
re_tessellation(*args)

 
read_in(*args)

 
read_in_atoms(*args)

 
remove_duplicates(*args)

 
tessellate(*args)

 
transform_and_add_extents(*args)

 
update_atoms(*args)

 
update_radii(*args)

 

Properties inherited from Surf:
Atom_Grid

 
get = Surf_Atom_Grid_get(...)

 
set = Surf_Atom_Grid_set(...)

 
Bounding_Tetra

 
get = Surf_Bounding_Tetra_get(...)

 
set = Surf_Bounding_Tetra_set(...)

 
Checks_On

 
get = Surf_Checks_On_get(...)

 
set = Surf_Checks_On_set(...)

 
Constraints

 
get = Surf_Constraints_get(...)

 
set = Surf_Constraints_set(...)

 
Current_atom

 
get = Surf_Current_atom_get(...)

 
set = Surf_Current_atom_set(...)

 
Extents

 
get = Surf_Extents_get(...)

 
set = Surf_Extents_set(...)

 
Max_Radius

 
get = Surf_Max_Radius_get(...)

 
set = Surf_Max_Radius_set(...)

 
Max_Tess_Len

 
get = Surf_Max_Tess_Len_get(...)

 
set = Surf_Max_Tess_Len_set(...)

 
Max_Tess_Len_Sq

 
get = Surf_Max_Tess_Len_Sq_get(...)

 
set = Surf_Max_Tess_Len_Sq_set(...)

 
Max_cons

 
get = Surf_Max_cons_get(...)

 
set = Surf_Max_cons_set(...)

 
Neighbor_list

 
get = Surf_Neighbor_list_get(...)

 
set = Surf_Neighbor_list_set(...)

 
New_Origin

 
get = Surf_New_Origin_get(...)

 
set = Surf_New_Origin_set(...)

 
Num_Voxels

 
get = Surf_Num_Voxels_get(...)

 
set = Surf_Num_Voxels_set(...)

 
Num_atoms

 
get = Surf_Num_atoms_get(...)

 
set = Surf_Num_atoms_set(...)

 
Num_p

 
get = Surf_Num_p_get(...)

 
set = Surf_Num_p_set(...)

 
Num_polys

 
get = Surf_Num_polys_get(...)

 
set = Surf_Num_polys_set(...)

 
Probe_radius

 
get = Surf_Probe_radius_get(...)

 
set = Surf_Probe_radius_set(...)

 
SAsum

 
get = Surf_SAsum_get(...)

 
set = Surf_SAsum_set(...)

 
Tot_cons

 
get = Surf_Tot_cons_get(...)

 
set = Surf_Tot_cons_set(...)

 
Voxel_Side

 
get = Surf_Voxel_Side_get(...)

 
set = Surf_Voxel_Side_set(...)

 
atomSel_

 
get = Surf_atomSel__get(...)

 
set = Surf_atomSel__set(...)

 
atom_type

 
get = Surf_atom_type_get(...)

 
set = Surf_atom_type_set(...)

 
atoms

 
get = Surf_atoms_get(...)

 
set = Surf_atoms_set(...)

 
out_spt

 
get = Surf_out_spt_get(...)

 
set = Surf_out_spt_set(...)

 
temp_cons

 
get = Surf_temp_cons_get(...)

 
set = Surf_temp_cons_set(...)

 

Data and other attributes inherited from Surf:
__dict__ = <dictproxy object at 0x25b37f8>

 
dictionary for instance variables (if defined)
__swig_getmethods__ = {'Atom_Grid': <built-in function Surf_Atom_Grid_get>, 'Bounding_Tetra': <built-in function Surf_Bounding_Tetra_get>, 'Checks_On': <built-in function Surf_Checks_On_get>, 'Constraints': <built-in function Surf_Constraints_get>, 'Current_atom': <built-in function Surf_Current_atom_get>, 'Extents': <built-in function Surf_Extents_get>, 'Max_Radius': <built-in function Surf_Max_Radius_get>, 'Max_Tess_Len': <built-in function Surf_Max_Tess_Len_get>, 'Max_Tess_Len_Sq': <built-in function Surf_Max_Tess_Len_Sq_get>, 'Max_cons': <built-in function Surf_Max_cons_get>, ...}
__swig_setmethods__ = {'Atom_Grid': <built-in function Surf_Atom_Grid_set>, 'Bounding_Tetra': <built-in function Surf_Bounding_Tetra_set>, 'Checks_On': <built-in function Surf_Checks_On_set>, 'Constraints': <built-in function Surf_Constraints_set>, 'Current_atom': <built-in function Surf_Current_atom_set>, 'Extents': <built-in function Surf_Extents_set>, 'Max_Radius': <built-in function Surf_Max_Radius_set>, 'Max_Tess_Len': <built-in function Surf_Max_Tess_Len_set>, 'Max_Tess_Len_Sq': <built-in function Surf_Max_Tess_Len_Sq_set>, 'Max_cons': <built-in function Surf_Max_cons_set>, ...}
__weakref__ = <attribute '__weakref__' of 'Surf' objects>

 
list of weak references to the object (if defined)

 
class Surf_out(__builtin__.object)
   
 

 
  Methods defined here:
__del__(self, destroy=<built-in function delete_Surf_out>)

 
__getattr__ lambda self, name

 
__init__(self, *args)

 
__repr__(self)

 
__setattr__ lambda self, name, value

 

Properties defined here:
Number_of_Atoms

 
get = Surf_out_Number_of_Atoms_get(...)

 
set = Surf_out_Number_of_Atoms_set(...)

 
Surface_points

 
get = Surf_out_Surface_points_get(...)

 
set = Surf_out_Surface_points_set(...)

 

Data and other attributes defined here:
__dict__ = <dictproxy object at 0x25b3948>

 
dictionary for instance variables (if defined)
__swig_getmethods__ = {'Number_of_Atoms': <built-in function Surf_out_Number_of_Atoms_get>, 'Surface_points': <built-in function Surf_out_Surface_points_get>}
__swig_setmethods__ = {'Number_of_Atoms': <built-in function Surf_out_Number_of_Atoms_set>, 'Surface_points': <built-in function Surf_out_Surface_points_set>}
__weakref__ = <attribute '__weakref__' of 'Surf_out' objects>

 
list of weak references to the object (if defined)

 
class Surf_outPtr(Surf_out)
   
 

 
 
Method resolution order:
Surf_outPtr
Surf_out
__builtin__.object

Methods defined here:
__init__(self, this)

 

Methods inherited from Surf_out:
__del__(self, destroy=<built-in function delete_Surf_out>)

 
__getattr__ lambda self, name

 
__repr__(self)

 
__setattr__ lambda self, name, value

 

Properties inherited from Surf_out:
Number_of_Atoms

 
get = Surf_out_Number_of_Atoms_get(...)

 
set = Surf_out_Number_of_Atoms_set(...)

 
Surface_points

 
get = Surf_out_Surface_points_get(...)

 
set = Surf_out_Surface_points_set(...)

 

Data and other attributes inherited from Surf_out:
__dict__ = <dictproxy object at 0x25b3ec0>

 
dictionary for instance variables (if defined)
__swig_getmethods__ = {'Number_of_Atoms': <built-in function Surf_out_Number_of_Atoms_get>, 'Surface_points': <built-in function Surf_out_Surface_points_get>}
__swig_setmethods__ = {'Number_of_Atoms': <built-in function Surf_out_Number_of_Atoms_set>, 'Surface_points': <built-in function Surf_out_Surface_points_set>}
__weakref__ = <attribute '__weakref__' of 'Surf_out' objects>

 
list of weak references to the object (if defined)

 
class SurfacePoint(__builtin__.object)
   
 

 
  Methods defined here:
__del__(self, destroy=<built-in function delete_SurfacePoint>)

 
__getattr__ lambda self, name

 
__init__(self, *args)

 
__repr__(self)

 
__setattr__ lambda self, name, value

 

Properties defined here:
At_nmbr

 
get = SurfacePoint_At_nmbr_get(...)

 
set = SurfacePoint_At_nmbr_set(...)

 
coord

 
get = SurfacePoint_coord_get(...)

 
set = SurfacePoint_coord_set(...)

 
normal

 
get = SurfacePoint_normal_get(...)

 
set = SurfacePoint_normal_set(...)

 
triType

 
get = SurfacePoint_triType_get(...)

 
set = SurfacePoint_triType_set(...)

 
weight

 
get = SurfacePoint_weight_get(...)

 
set = SurfacePoint_weight_set(...)

 

Data and other attributes defined here:
__dict__ = <dictproxy object at 0x25b3cc8>

 
dictionary for instance variables (if defined)
__swig_getmethods__ = {'At_nmbr': <built-in function SurfacePoint_At_nmbr_get>, 'coord': <built-in function SurfacePoint_coord_get>, 'normal': <built-in function SurfacePoint_normal_get>, 'triType': <built-in function SurfacePoint_triType_get>, 'weight': <built-in function SurfacePoint_weight_get>}
__swig_setmethods__ = {'At_nmbr': <built-in function SurfacePoint_At_nmbr_set>, 'coord': <built-in function SurfacePoint_coord_set>, 'normal': <built-in function SurfacePoint_normal_set>, 'triType': <built-in function SurfacePoint_triType_set>, 'weight': <built-in function SurfacePoint_weight_set>}
__weakref__ = <attribute '__weakref__' of 'SurfacePoint' objects>

 
list of weak references to the object (if defined)

 
class SurfacePointOUT(__builtin__.object)
   
 

 
  Methods defined here:
__del__(self, destroy=<built-in function delete_SurfacePointOUT>)

 
__getattr__ lambda self, name

 
__init__(self, *args)

 
__repr__(self)

 
__setattr__ lambda self, name, value

 

Properties defined here:
At_nmbr

 
get = SurfacePointOUT_At_nmbr_get(...)

 
set = SurfacePointOUT_At_nmbr_set(...)

 
Norm

 
get = SurfacePointOUT_Norm_get(...)

 
set = SurfacePointOUT_Norm_set(...)

 
Sum

 
get = SurfacePointOUT_Sum_get(...)

 
set = SurfacePointOUT_Sum_set(...)

 
Sum2

 
get = SurfacePointOUT_Sum2_get(...)

 
set = SurfacePointOUT_Sum2_set(...)

 
grid

 
get = SurfacePointOUT_grid_get(...)

 
set = SurfacePointOUT_grid_set(...)

 

Data and other attributes defined here:
__dict__ = <dictproxy object at 0x25b3ec0>

 
dictionary for instance variables (if defined)
__swig_getmethods__ = {'At_nmbr': <built-in function SurfacePointOUT_At_nmbr_get>, 'Norm': <built-in function SurfacePointOUT_Norm_get>, 'Sum': <built-in function SurfacePointOUT_Sum_get>, 'Sum2': <built-in function SurfacePointOUT_Sum2_get>, 'grid': <built-in function SurfacePointOUT_grid_get>}
__swig_setmethods__ = {'At_nmbr': <built-in function SurfacePointOUT_At_nmbr_set>, 'Norm': <built-in function SurfacePointOUT_Norm_set>, 'Sum': <built-in function SurfacePointOUT_Sum_set>, 'Sum2': <built-in function SurfacePointOUT_Sum2_set>, 'grid': <built-in function SurfacePointOUT_grid_set>}
__weakref__ = <attribute '__weakref__' of 'SurfacePointOUT' objects>

 
list of weak references to the object (if defined)

 
class SurfacePointOUTPtr(SurfacePointOUT)
   
 

 
 
Method resolution order:
SurfacePointOUTPtr
SurfacePointOUT
__builtin__.object

Methods defined here:
__init__(self, this)

 

Methods inherited from SurfacePointOUT:
__del__(self, destroy=<built-in function delete_SurfacePointOUT>)

 
__getattr__ lambda self, name

 
__repr__(self)

 
__setattr__ lambda self, name, value

 

Properties inherited from SurfacePointOUT:
At_nmbr

 
get = SurfacePointOUT_At_nmbr_get(...)

 
set = SurfacePointOUT_At_nmbr_set(...)

 
Norm

 
get = SurfacePointOUT_Norm_get(...)

 
set = SurfacePointOUT_Norm_set(...)

 
Sum

 
get = SurfacePointOUT_Sum_get(...)

 
set = SurfacePointOUT_Sum_set(...)

 
Sum2

 
get = SurfacePointOUT_Sum2_get(...)

 
set = SurfacePointOUT_Sum2_set(...)

 
grid

 
get = SurfacePointOUT_grid_get(...)

 
set = SurfacePointOUT_grid_set(...)

 

Data and other attributes inherited from SurfacePointOUT:
__dict__ = <dictproxy object at 0x25b3948>

 
dictionary for instance variables (if defined)
__swig_getmethods__ = {'At_nmbr': <built-in function SurfacePointOUT_At_nmbr_get>, 'Norm': <built-in function SurfacePointOUT_Norm_get>, 'Sum': <built-in function SurfacePointOUT_Sum_get>, 'Sum2': <built-in function SurfacePointOUT_Sum2_get>, 'grid': <built-in function SurfacePointOUT_grid_get>}
__swig_setmethods__ = {'At_nmbr': <built-in function SurfacePointOUT_At_nmbr_set>, 'Norm': <built-in function SurfacePointOUT_Norm_set>, 'Sum': <built-in function SurfacePointOUT_Sum_set>, 'Sum2': <built-in function SurfacePointOUT_Sum2_set>, 'grid': <built-in function SurfacePointOUT_grid_set>}
__weakref__ = <attribute '__weakref__' of 'SurfacePointOUT' objects>

 
list of weak references to the object (if defined)

 
class SurfacePointPtr(SurfacePoint)
   
 

 
 
Method resolution order:
SurfacePointPtr
SurfacePoint
__builtin__.object

Methods defined here:
__init__(self, this)

 

Methods inherited from SurfacePoint:
__del__(self, destroy=<built-in function delete_SurfacePoint>)

 
__getattr__ lambda self, name

 
__repr__(self)

 
__setattr__ lambda self, name, value

 

Properties inherited from SurfacePoint:
At_nmbr

 
get = SurfacePoint_At_nmbr_get(...)

 
set = SurfacePoint_At_nmbr_set(...)

 
coord

 
get = SurfacePoint_coord_get(...)

 
set = SurfacePoint_coord_set(...)

 
normal

 
get = SurfacePoint_normal_get(...)

 
set = SurfacePoint_normal_set(...)

 
triType

 
get = SurfacePoint_triType_get(...)

 
set = SurfacePoint_triType_set(...)

 
weight

 
get = SurfacePoint_weight_get(...)

 
set = SurfacePoint_weight_set(...)

 

Data and other attributes inherited from SurfacePoint:
__dict__ = <dictproxy object at 0x25b3ec0>

 
dictionary for instance variables (if defined)
__swig_getmethods__ = {'At_nmbr': <built-in function SurfacePoint_At_nmbr_get>, 'coord': <built-in function SurfacePoint_coord_get>, 'normal': <built-in function SurfacePoint_normal_get>, 'triType': <built-in function SurfacePoint_triType_get>, 'weight': <built-in function SurfacePoint_weight_get>}
__swig_setmethods__ = {'At_nmbr': <built-in function SurfacePoint_At_nmbr_set>, 'coord': <built-in function SurfacePoint_coord_set>, 'normal': <built-in function SurfacePoint_normal_set>, 'triType': <built-in function SurfacePoint_triType_set>, 'weight': <built-in function SurfacePoint_weight_set>}
__weakref__ = <attribute '__weakref__' of 'SurfacePoint' objects>

 
list of weak references to the object (if defined)

 
class Torus(__builtin__.object)
   
 

 
  Methods defined here:
__del__(self, destroy=<built-in function delete_Torus>)

 
__getattr__ lambda self, name

 
__init__(self, *args)

 
__repr__(self)

 
__setattr__ lambda self, name, value

 

Properties defined here:
edge_id

 
get = Torus_edge_id_get(...)

 
set = Torus_edge_id_set(...)

 
end_atoms

 
get = Torus_end_atoms_get(...)

 
set = Torus_end_atoms_set(...)

 
face_atoms

 
get = Torus_face_atoms_get(...)

 
set = Torus_face_atoms_set(...)

 
face_id

 
get = Torus_face_id_get(...)

 
set = Torus_face_id_set(...)

 
next

 
get = Torus_next_get(...)

 
set = Torus_next_set(...)

 
num_int_verts

 
get = Torus_num_int_verts_get(...)

 
set = Torus_num_int_verts_set(...)

 
prev

 
get = Torus_prev_get(...)

 
set = Torus_prev_set(...)

 

Data and other attributes defined here:
__dict__ = <dictproxy object at 0x25b3d38>

 
dictionary for instance variables (if defined)
__swig_getmethods__ = {'edge_id': <built-in function Torus_edge_id_get>, 'end_atoms': <built-in function Torus_end_atoms_get>, 'face_atoms': <built-in function Torus_face_atoms_get>, 'face_id': <built-in function Torus_face_id_get>, 'next': <built-in function Torus_next_get>, 'num_int_verts': <built-in function Torus_num_int_verts_get>, 'prev': <built-in function Torus_prev_get>}
__swig_setmethods__ = {'edge_id': <built-in function Torus_edge_id_set>, 'end_atoms': <built-in function Torus_end_atoms_set>, 'face_atoms': <built-in function Torus_face_atoms_set>, 'face_id': <built-in function Torus_face_id_set>, 'next': <built-in function Torus_next_set>, 'num_int_verts': <built-in function Torus_num_int_verts_set>, 'prev': <built-in function Torus_prev_set>}
__weakref__ = <attribute '__weakref__' of 'Torus' objects>

 
list of weak references to the object (if defined)

 
class TorusPtr(Torus)
   
 

 
 
Method resolution order:
TorusPtr
Torus
__builtin__.object

Methods defined here:
__init__(self, this)

 

Methods inherited from Torus:
__del__(self, destroy=<built-in function delete_Torus>)

 
__getattr__ lambda self, name

 
__repr__(self)

 
__setattr__ lambda self, name, value

 

Properties inherited from Torus:
edge_id

 
get = Torus_edge_id_get(...)

 
set = Torus_edge_id_set(...)

 
end_atoms

 
get = Torus_end_atoms_get(...)

 
set = Torus_end_atoms_set(...)

 
face_atoms

 
get = Torus_face_atoms_get(...)

 
set = Torus_face_atoms_set(...)

 
face_id

 
get = Torus_face_id_get(...)

 
set = Torus_face_id_set(...)

 
next

 
get = Torus_next_get(...)

 
set = Torus_next_set(...)

 
num_int_verts

 
get = Torus_num_int_verts_get(...)

 
set = Torus_num_int_verts_set(...)

 
prev

 
get = Torus_prev_get(...)

 
set = Torus_prev_set(...)

 

Data and other attributes inherited from Torus:
__dict__ = <dictproxy object at 0x25b39f0>

 
dictionary for instance variables (if defined)
__swig_getmethods__ = {'edge_id': <built-in function Torus_edge_id_get>, 'end_atoms': <built-in function Torus_end_atoms_get>, 'face_atoms': <built-in function Torus_face_atoms_get>, 'face_id': <built-in function Torus_face_id_get>, 'next': <built-in function Torus_next_get>, 'num_int_verts': <built-in function Torus_num_int_verts_get>, 'prev': <built-in function Torus_prev_get>}
__swig_setmethods__ = {'edge_id': <built-in function Torus_edge_id_set>, 'end_atoms': <built-in function Torus_end_atoms_set>, 'face_atoms': <built-in function Torus_face_atoms_set>, 'face_id': <built-in function Torus_face_id_set>, 'next': <built-in function Torus_next_set>, 'num_int_verts': <built-in function Torus_num_int_verts_set>, 'prev': <built-in function Torus_prev_set>}
__weakref__ = <attribute '__weakref__' of 'Torus' objects>

 
list of weak references to the object (if defined)

 
class V_ector(__builtin__.object)
   
 

 
  Methods defined here:
__del__(self, destroy=<built-in function delete_V_ector>)

 
__getattr__ lambda self, name

 
__init__(self, *args)

 
__repr__(self)

 
__setattr__ lambda self, name, value

 

Properties defined here:
atom_id

 
get = V_ector_atom_id_get(...)

 
set = V_ector_atom_id_set(...)

 
coeff

 
get = V_ector_coeff_get(...)

 
set = V_ector_coeff_set(...)

 

Data and other attributes defined here:
__dict__ = <dictproxy object at 0x25b37f8>

 
dictionary for instance variables (if defined)
__swig_getmethods__ = {'atom_id': <built-in function V_ector_atom_id_get>, 'coeff': <built-in function V_ector_coeff_get>}
__swig_setmethods__ = {'atom_id': <built-in function V_ector_atom_id_set>, 'coeff': <built-in function V_ector_coeff_set>}
__weakref__ = <attribute '__weakref__' of 'V_ector' objects>

 
list of weak references to the object (if defined)

 
class V_ectorPtr(V_ector)
   
 

 
 
Method resolution order:
V_ectorPtr
V_ector
__builtin__.object

Methods defined here:
__init__(self, this)

 

Methods inherited from V_ector:
__del__(self, destroy=<built-in function delete_V_ector>)

 
__getattr__ lambda self, name

 
__repr__(self)

 
__setattr__ lambda self, name, value

 

Properties inherited from V_ector:
atom_id

 
get = V_ector_atom_id_get(...)

 
set = V_ector_atom_id_set(...)

 
coeff

 
get = V_ector_coeff_get(...)

 
set = V_ector_coeff_set(...)

 

Data and other attributes inherited from V_ector:
__dict__ = <dictproxy object at 0x25b37f8>

 
dictionary for instance variables (if defined)
__swig_getmethods__ = {'atom_id': <built-in function V_ector_atom_id_get>, 'coeff': <built-in function V_ector_coeff_get>}
__swig_setmethods__ = {'atom_id': <built-in function V_ector_atom_id_set>, 'coeff': <built-in function V_ector_coeff_set>}
__weakref__ = <attribute '__weakref__' of 'V_ector' objects>

 
list of weak references to the object (if defined)

 
class VertexType(__builtin__.object)
   
 

 
  Methods defined here:
__del__(self, destroy=<built-in function delete_VertexType>)

 
__getattr__ lambda self, name

 
__init__(self, *args)

 
__repr__(self)

 
__setattr__ lambda self, name, value

 

Properties defined here:
Coord

 
get = VertexType_Coord_get(...)

 
set = VertexType_Coord_set(...)

 
Normal

 
get = VertexType_Normal_get(...)

 
set = VertexType_Normal_set(...)

 

Data and other attributes defined here:
__dict__ = <dictproxy object at 0x25b37f8>

 
dictionary for instance variables (if defined)
__swig_getmethods__ = {'Coord': <built-in function VertexType_Coord_get>, 'Normal': <built-in function VertexType_Normal_get>}
__swig_setmethods__ = {'Coord': <built-in function VertexType_Coord_set>, 'Normal': <built-in function VertexType_Normal_set>}
__weakref__ = <attribute '__weakref__' of 'VertexType' objects>

 
list of weak references to the object (if defined)

 
class VertexTypePtr(VertexType)
   
 

 
 
Method resolution order:
VertexTypePtr
VertexType
__builtin__.object

Methods defined here:
__init__(self, this)

 

Methods inherited from VertexType:
__del__(self, destroy=<built-in function delete_VertexType>)

 
__getattr__ lambda self, name

 
__repr__(self)

 
__setattr__ lambda self, name, value

 

Properties inherited from VertexType:
Coord

 
get = VertexType_Coord_get(...)

 
set = VertexType_Coord_set(...)

 
Normal

 
get = VertexType_Normal_get(...)

 
set = VertexType_Normal_set(...)

 

Data and other attributes inherited from VertexType:
__dict__ = <dictproxy object at 0x25b3948>

 
dictionary for instance variables (if defined)
__swig_getmethods__ = {'Coord': <built-in function VertexType_Coord_get>, 'Normal': <built-in function VertexType_Normal_get>}
__swig_setmethods__ = {'Coord': <built-in function VertexType_Coord_set>, 'Normal': <built-in function VertexType_Normal_set>}
__weakref__ = <attribute '__weakref__' of 'VertexType' objects>

 
list of weak references to the object (if defined)

 
class eigS(__builtin__.object)
   
 

 
  Methods defined here:
__del__(self, destroy=<built-in function delete_eigS>)

 
__getattr__ lambda self, name

 
__init__(self, *args)

 
__repr__(self)

 
__setattr__ lambda self, name, value

 

Properties defined here:
Ex

 
get = eigS_Ex_get(...)

 
set = eigS_Ex_set(...)

 
Ey

 
get = eigS_Ey_get(...)

 
set = eigS_Ey_set(...)

 
Ez

 
get = eigS_Ez_get(...)

 
set = eigS_Ez_set(...)

 
Vx

 
get = eigS_Vx_get(...)

 
set = eigS_Vx_set(...)

 
Vy

 
get = eigS_Vy_get(...)

 
set = eigS_Vy_set(...)

 
Vz

 
get = eigS_Vz_get(...)

 
set = eigS_Vz_set(...)

 

Data and other attributes defined here:
__dict__ = <dictproxy object at 0x25b3b40>

 
dictionary for instance variables (if defined)
__swig_getmethods__ = {'Ex': <built-in function eigS_Ex_get>, 'Ey': <built-in function eigS_Ey_get>, 'Ez': <built-in function eigS_Ez_get>, 'Vx': <built-in function eigS_Vx_get>, 'Vy': <built-in function eigS_Vy_get>, 'Vz': <built-in function eigS_Vz_get>}
__swig_setmethods__ = {'Ex': <built-in function eigS_Ex_set>, 'Ey': <built-in function eigS_Ey_set>, 'Ez': <built-in function eigS_Ez_set>, 'Vx': <built-in function eigS_Vx_set>, 'Vy': <built-in function eigS_Vy_set>, 'Vz': <built-in function eigS_Vz_set>}
__weakref__ = <attribute '__weakref__' of 'eigS' objects>

 
list of weak references to the object (if defined)

 
class eigSPtr(eigS)
   
 

 
 
Method resolution order:
eigSPtr
eigS
__builtin__.object

Methods defined here:
__init__(self, this)

 

Methods inherited from eigS:
__del__(self, destroy=<built-in function delete_eigS>)

 
__getattr__ lambda self, name

 
__repr__(self)

 
__setattr__ lambda self, name, value

 

Properties inherited from eigS:
Ex

 
get = eigS_Ex_get(...)

 
set = eigS_Ex_set(...)

 
Ey

 
get = eigS_Ey_get(...)

 
set = eigS_Ey_set(...)

 
Ez

 
get = eigS_Ez_get(...)

 
set = eigS_Ez_set(...)

 
Vx

 
get = eigS_Vx_get(...)

 
set = eigS_Vx_set(...)

 
Vy

 
get = eigS_Vy_get(...)

 
set = eigS_Vy_set(...)

 
Vz

 
get = eigS_Vz_get(...)

 
set = eigS_Vz_set(...)

 

Data and other attributes inherited from eigS:
__dict__ = <dictproxy object at 0x25b38d8>

 
dictionary for instance variables (if defined)
__swig_getmethods__ = {'Ex': <built-in function eigS_Ex_get>, 'Ey': <built-in function eigS_Ey_get>, 'Ez': <built-in function eigS_Ez_get>, 'Vx': <built-in function eigS_Vx_get>, 'Vy': <built-in function eigS_Vy_get>, 'Vz': <built-in function eigS_Vz_get>}
__swig_setmethods__ = {'Ex': <built-in function eigS_Ex_set>, 'Ey': <built-in function eigS_Ey_set>, 'Ez': <built-in function eigS_Ez_set>, 'Vx': <built-in function eigS_Vx_set>, 'Vy': <built-in function eigS_Vy_set>, 'Vz': <built-in function eigS_Vz_set>}
__weakref__ = <attribute '__weakref__' of 'eigS' objects>

 
list of weak references to the object (if defined)

 
class redge(__builtin__.object)
   
 

 
  Methods defined here:
__del__(self, destroy=<built-in function delete_redge>)

 
__getattr__ lambda self, name

 
__init__(self, *args)

 
__repr__(self)

 
__setattr__ lambda self, name, value

 

Properties defined here:
adj_faces

 
get = redge_adj_faces_get(...)

 
set = redge_adj_faces_set(...)

 
end_pts

 
get = redge_end_pts_get(...)

 
set = redge_end_pts_set(...)

 
int_pts

 
get = redge_int_pts_get(...)

 
set = redge_int_pts_set(...)

 

Data and other attributes defined here:
__dict__ = <dictproxy object at 0x25b3cc8>

 
dictionary for instance variables (if defined)
__swig_getmethods__ = {'adj_faces': <built-in function redge_adj_faces_get>, 'end_pts': <built-in function redge_end_pts_get>, 'int_pts': <built-in function redge_int_pts_get>}
__swig_setmethods__ = {'adj_faces': <built-in function redge_adj_faces_set>, 'end_pts': <built-in function redge_end_pts_set>, 'int_pts': <built-in function redge_int_pts_set>}
__weakref__ = <attribute '__weakref__' of 'redge' objects>

 
list of weak references to the object (if defined)

 
class redgePtr(redge)
   
 

 
 
Method resolution order:
redgePtr
redge
__builtin__.object

Methods defined here:
__init__(self, this)

 

Methods inherited from redge:
__del__(self, destroy=<built-in function delete_redge>)

 
__getattr__ lambda self, name

 
__repr__(self)

 
__setattr__ lambda self, name, value

 

Properties inherited from redge:
adj_faces

 
get = redge_adj_faces_get(...)

 
set = redge_adj_faces_set(...)

 
end_pts

 
get = redge_end_pts_get(...)

 
set = redge_end_pts_set(...)

 
int_pts

 
get = redge_int_pts_get(...)

 
set = redge_int_pts_set(...)

 

Data and other attributes inherited from redge:
__dict__ = <dictproxy object at 0x25b3ad0>

 
dictionary for instance variables (if defined)
__swig_getmethods__ = {'adj_faces': <built-in function redge_adj_faces_get>, 'end_pts': <built-in function redge_end_pts_get>, 'int_pts': <built-in function redge_int_pts_get>}
__swig_setmethods__ = {'adj_faces': <built-in function redge_adj_faces_set>, 'end_pts': <built-in function redge_end_pts_set>, 'int_pts': <built-in function redge_int_pts_set>}
__weakref__ = <attribute '__weakref__' of 'redge' objects>

 
list of weak references to the object (if defined)

 
class rface(__builtin__.object)
   
 

 
  Methods defined here:
__del__(self, destroy=<built-in function delete_rface>)

 
__getattr__ lambda self, name

 
__init__(self, *args)

 
__repr__(self)

 
__setattr__ lambda self, name, value

 

Properties defined here:
edge

 
get = rface_edge_get(...)

 
set = rface_edge_set(...)

 
id

 
get = rface_id_get(...)

 
set = rface_id_set(...)

 
num_verts

 
get = rface_num_verts_get(...)

 
set = rface_num_verts_set(...)

 
vert

 
get = rface_vert_get(...)

 
set = rface_vert_set(...)

 

Data and other attributes defined here:
__dict__ = <dictproxy object at 0x25b3c58>

 
dictionary for instance variables (if defined)
__swig_getmethods__ = {'edge': <built-in function rface_edge_get>, 'id': <built-in function rface_id_get>, 'num_verts': <built-in function rface_num_verts_get>, 'vert': <built-in function rface_vert_get>}
__swig_setmethods__ = {'edge': <built-in function rface_edge_set>, 'id': <built-in function rface_id_set>, 'num_verts': <built-in function rface_num_verts_set>, 'vert': <built-in function rface_vert_set>}
__weakref__ = <attribute '__weakref__' of 'rface' objects>

 
list of weak references to the object (if defined)

 
class rfacePtr(rface)
   
 

 
 
Method resolution order:
rfacePtr
rface
__builtin__.object

Methods defined here:
__init__(self, this)

 

Methods inherited from rface:
__del__(self, destroy=<built-in function delete_rface>)

 
__getattr__ lambda self, name

 
__repr__(self)

 
__setattr__ lambda self, name, value

 

Properties inherited from rface:
edge

 
get = rface_edge_get(...)

 
set = rface_edge_set(...)

 
id

 
get = rface_id_get(...)

 
set = rface_id_set(...)

 
num_verts

 
get = rface_num_verts_get(...)

 
set = rface_num_verts_set(...)

 
vert

 
get = rface_vert_get(...)

 
set = rface_vert_set(...)

 

Data and other attributes inherited from rface:
__dict__ = <dictproxy object at 0x25b3f68>

 
dictionary for instance variables (if defined)
__swig_getmethods__ = {'edge': <built-in function rface_edge_get>, 'id': <built-in function rface_id_get>, 'num_verts': <built-in function rface_num_verts_get>, 'vert': <built-in function rface_vert_get>}
__swig_setmethods__ = {'edge': <built-in function rface_edge_set>, 'id': <built-in function rface_id_set>, 'num_verts': <built-in function rface_num_verts_set>, 'vert': <built-in function rface_vert_set>}
__weakref__ = <attribute '__weakref__' of 'rface' objects>

 
list of weak references to the object (if defined)

 
class rvertex(__builtin__.object)
   
 

 
  Methods defined here:
__del__(self, destroy=<built-in function delete_rvertex>)

 
__getattr__ lambda self, name

 
__init__(self, *args)

 
__repr__(self)

 
__setattr__ lambda self, name, value

 

Properties defined here:
adj_faces

 
get = rvertex_adj_faces_get(...)

 
set = rvertex_adj_faces_set(...)

 
in_edges

 
get = rvertex_in_edges_get(...)

 
set = rvertex_in_edges_set(...)

 
sq_dist

 
get = rvertex_sq_dist_get(...)

 
set = rvertex_sq_dist_set(...)

 
v

 
get = rvertex_v_get(...)

 
set = rvertex_v_set(...)

 

Data and other attributes defined here:
__dict__ = <dictproxy object at 0x25b3d00>

 
dictionary for instance variables (if defined)
__swig_getmethods__ = {'adj_faces': <built-in function rvertex_adj_faces_get>, 'in_edges': <built-in function rvertex_in_edges_get>, 'sq_dist': <built-in function rvertex_sq_dist_get>, 'v': <built-in function rvertex_v_get>}
__swig_setmethods__ = {'adj_faces': <built-in function rvertex_adj_faces_set>, 'in_edges': <built-in function rvertex_in_edges_set>, 'sq_dist': <built-in function rvertex_sq_dist_set>, 'v': <built-in function rvertex_v_set>}
__weakref__ = <attribute '__weakref__' of 'rvertex' objects>

 
list of weak references to the object (if defined)

 
class rvertexPtr(rvertex)
   
 

 
 
Method resolution order:
rvertexPtr
rvertex
__builtin__.object

Methods defined here:
__init__(self, this)

 

Methods inherited from rvertex:
__del__(self, destroy=<built-in function delete_rvertex>)

 
__getattr__ lambda self, name

 
__repr__(self)

 
__setattr__ lambda self, name, value

 

Properties inherited from rvertex:
adj_faces

 
get = rvertex_adj_faces_get(...)

 
set = rvertex_adj_faces_set(...)

 
in_edges

 
get = rvertex_in_edges_get(...)

 
set = rvertex_in_edges_set(...)

 
sq_dist

 
get = rvertex_sq_dist_get(...)

 
set = rvertex_sq_dist_set(...)

 
v

 
get = rvertex_v_get(...)

 
set = rvertex_v_set(...)

 

Data and other attributes inherited from rvertex:
__dict__ = <dictproxy object at 0x25b3f68>

 
dictionary for instance variables (if defined)
__swig_getmethods__ = {'adj_faces': <built-in function rvertex_adj_faces_get>, 'in_edges': <built-in function rvertex_in_edges_get>, 'sq_dist': <built-in function rvertex_sq_dist_get>, 'v': <built-in function rvertex_v_get>}
__swig_setmethods__ = {'adj_faces': <built-in function rvertex_adj_faces_set>, 'in_edges': <built-in function rvertex_in_edges_set>, 'sq_dist': <built-in function rvertex_sq_dist_set>, 'v': <built-in function rvertex_v_set>}
__weakref__ = <attribute '__weakref__' of 'rvertex' objects>

 
list of weak references to the object (if defined)

 
class tedge(__builtin__.object)
   
 

 
  Methods defined here:
__del__(self, destroy=<built-in function delete_tedge>)

 
__getattr__ lambda self, name

 
__init__(self, *args)

 
__repr__(self)

 
__setattr__ lambda self, name, value

 

Properties defined here:
adjface

 
get = tedge_adjface_get(...)

 
set = tedge_adjface_set(...)

 
deleted

 
get = tedge_deleted_get(...)

 
set = tedge_deleted_set(...)

 
ednum

 
get = tedge_ednum_get(...)

 
set = tedge_ednum_set(...)

 
endpts

 
get = tedge_endpts_get(...)

 
set = tedge_endpts_set(...)

 
next

 
get = tedge_next_get(...)

 
set = tedge_next_set(...)

 
prev

 
get = tedge_prev_get(...)

 
set = tedge_prev_set(...)

 

Data and other attributes defined here:
__dict__ = <dictproxy object at 0x25b3da8>

 
dictionary for instance variables (if defined)
__swig_getmethods__ = {'adjface': <built-in function tedge_adjface_get>, 'deleted': <built-in function tedge_deleted_get>, 'ednum': <built-in function tedge_ednum_get>, 'endpts': <built-in function tedge_endpts_get>, 'next': <built-in function tedge_next_get>, 'prev': <built-in function tedge_prev_get>}
__swig_setmethods__ = {'adjface': <built-in function tedge_adjface_set>, 'deleted': <built-in function tedge_deleted_set>, 'ednum': <built-in function tedge_ednum_set>, 'endpts': <built-in function tedge_endpts_set>, 'next': <built-in function tedge_next_set>, 'prev': <built-in function tedge_prev_set>}
__weakref__ = <attribute '__weakref__' of 'tedge' objects>

 
list of weak references to the object (if defined)

 
class tedgePtr(tedge)
   
 

 
 
Method resolution order:
tedgePtr
tedge
__builtin__.object

Methods defined here:
__init__(self, this)

 

Methods inherited from tedge:
__del__(self, destroy=<built-in function delete_tedge>)

 
__getattr__ lambda self, name

 
__repr__(self)

 
__setattr__ lambda self, name, value

 

Properties inherited from tedge:
adjface

 
get = tedge_adjface_get(...)

 
set = tedge_adjface_set(...)

 
deleted

 
get = tedge_deleted_get(...)

 
set = tedge_deleted_set(...)

 
ednum

 
get = tedge_ednum_get(...)

 
set = tedge_ednum_set(...)

 
endpts

 
get = tedge_endpts_get(...)

 
set = tedge_endpts_set(...)

 
next

 
get = tedge_next_get(...)

 
set = tedge_next_set(...)

 
prev

 
get = tedge_prev_get(...)

 
set = tedge_prev_set(...)

 

Data and other attributes inherited from tedge:
__dict__ = <dictproxy object at 0x25b3be8>

 
dictionary for instance variables (if defined)
__swig_getmethods__ = {'adjface': <built-in function tedge_adjface_get>, 'deleted': <built-in function tedge_deleted_get>, 'ednum': <built-in function tedge_ednum_get>, 'endpts': <built-in function tedge_endpts_get>, 'next': <built-in function tedge_next_get>, 'prev': <built-in function tedge_prev_get>}
__swig_setmethods__ = {'adjface': <built-in function tedge_adjface_set>, 'deleted': <built-in function tedge_deleted_set>, 'ednum': <built-in function tedge_ednum_set>, 'endpts': <built-in function tedge_endpts_set>, 'next': <built-in function tedge_next_set>, 'prev': <built-in function tedge_prev_set>}
__weakref__ = <attribute '__weakref__' of 'tedge' objects>

 
list of weak references to the object (if defined)

 
class tface(__builtin__.object)
   
 

 
  Methods defined here:
__del__(self, destroy=<built-in function delete_tface>)

 
__getattr__ lambda self, name

 
__init__(self, *args)

 
__repr__(self)

 
__setattr__ lambda self, name, value

 

Properties defined here:
edg

 
get = tface_edg_get(...)

 
set = tface_edg_set(...)

 
fnum

 
get = tface_fnum_get(...)

 
set = tface_fnum_set(...)

 
next

 
get = tface_next_get(...)

 
set = tface_next_set(...)

 
p

 
get = tface_p_get(...)

 
set = tface_p_set(...)

 
prev

 
get = tface_prev_get(...)

 
set = tface_prev_set(...)

 
sq_dist

 
get = tface_sq_dist_get(...)

 
set = tface_sq_dist_set(...)

 
vert

 
get = tface_vert_get(...)

 
set = tface_vert_set(...)

 
visible

 
get = tface_visible_get(...)

 
set = tface_visible_set(...)

 

Data and other attributes defined here:
__dict__ = <dictproxy object at 0x25b3e88>

 
dictionary for instance variables (if defined)
__swig_getmethods__ = {'edg': <built-in function tface_edg_get>, 'fnum': <built-in function tface_fnum_get>, 'next': <built-in function tface_next_get>, 'p': <built-in function tface_p_get>, 'prev': <built-in function tface_prev_get>, 'sq_dist': <built-in function tface_sq_dist_get>, 'vert': <built-in function tface_vert_get>, 'visible': <built-in function tface_visible_get>}
__swig_setmethods__ = {'edg': <built-in function tface_edg_set>, 'fnum': <built-in function tface_fnum_set>, 'next': <built-in function tface_next_set>, 'p': <built-in function tface_p_set>, 'prev': <built-in function tface_prev_set>, 'sq_dist': <built-in function tface_sq_dist_set>, 'vert': <built-in function tface_vert_set>, 'visible': <built-in function tface_visible_set>}
__weakref__ = <attribute '__weakref__' of 'tface' objects>

 
list of weak references to the object (if defined)

 
class tfacePtr(tface)
   
 

 
 
Method resolution order:
tfacePtr
tface
__builtin__.object

Methods defined here:
__init__(self, this)

 

Methods inherited from tface:
__del__(self, destroy=<built-in function delete_tface>)

 
__getattr__ lambda self, name

 
__repr__(self)

 
__setattr__ lambda self, name, value

 

Properties inherited from tface:
edg

 
get = tface_edg_get(...)

 
set = tface_edg_set(...)

 
fnum

 
get = tface_fnum_get(...)

 
set = tface_fnum_set(...)

 
next

 
get = tface_next_get(...)

 
set = tface_next_set(...)

 
p

 
get = tface_p_get(...)

 
set = tface_p_set(...)

 
prev

 
get = tface_prev_get(...)

 
set = tface_prev_set(...)

 
sq_dist

 
get = tface_sq_dist_get(...)

 
set = tface_sq_dist_set(...)

 
vert

 
get = tface_vert_get(...)

 
set = tface_vert_set(...)

 
visible

 
get = tface_visible_get(...)

 
set = tface_visible_set(...)

 

Data and other attributes inherited from tface:
__dict__ = <dictproxy object at 0x25b3cc8>

 
dictionary for instance variables (if defined)
__swig_getmethods__ = {'edg': <built-in function tface_edg_get>, 'fnum': <built-in function tface_fnum_get>, 'next': <built-in function tface_next_get>, 'p': <built-in function tface_p_get>, 'prev': <built-in function tface_prev_get>, 'sq_dist': <built-in function tface_sq_dist_get>, 'vert': <built-in function tface_vert_get>, 'visible': <built-in function tface_visible_get>}
__swig_setmethods__ = {'edg': <built-in function tface_edg_set>, 'fnum': <built-in function tface_fnum_set>, 'next': <built-in function tface_next_set>, 'p': <built-in function tface_p_set>, 'prev': <built-in function tface_prev_set>, 'sq_dist': <built-in function tface_sq_dist_set>, 'vert': <built-in function tface_vert_set>, 'visible': <built-in function tface_visible_set>}
__weakref__ = <attribute '__weakref__' of 'tface' objects>

 
list of weak references to the object (if defined)

 
class tvertex(__builtin__.object)
   
 

 
  Methods defined here:
__del__(self, destroy=<built-in function delete_tvertex>)

 
__getattr__ lambda self, name

 
__init__(self, *args)

 
__repr__(self)

 
__setattr__ lambda self, name, value

 

Properties defined here:
active

 
get = tvertex_active_get(...)

 
set = tvertex_active_set(...)

 
data_ptr

 
get = tvertex_data_ptr_get(...)

 
set = tvertex_data_ptr_set(...)

 
duplicate

 
get = tvertex_duplicate_get(...)

 
set = tvertex_duplicate_set(...)

 
mark

 
get = tvertex_mark_get(...)

 
set = tvertex_mark_set(...)

 
next

 
get = tvertex_next_get(...)

 
set = tvertex_next_set(...)

 
prev

 
get = tvertex_prev_get(...)

 
set = tvertex_prev_set(...)

 
v

 
get = tvertex_v_get(...)

 
set = tvertex_v_set(...)

 
vnum

 
get = tvertex_vnum_get(...)

 
set = tvertex_vnum_set(...)

 

Data and other attributes defined here:
__dict__ = <dictproxy object at 0x25b3e88>

 
dictionary for instance variables (if defined)
__swig_getmethods__ = {'active': <built-in function tvertex_active_get>, 'data_ptr': <built-in function tvertex_data_ptr_get>, 'duplicate': <built-in function tvertex_duplicate_get>, 'mark': <built-in function tvertex_mark_get>, 'next': <built-in function tvertex_next_get>, 'prev': <built-in function tvertex_prev_get>, 'v': <built-in function tvertex_v_get>, 'vnum': <built-in function tvertex_vnum_get>}
__swig_setmethods__ = {'active': <built-in function tvertex_active_set>, 'data_ptr': <built-in function tvertex_data_ptr_set>, 'duplicate': <built-in function tvertex_duplicate_set>, 'mark': <built-in function tvertex_mark_set>, 'next': <built-in function tvertex_next_set>, 'prev': <built-in function tvertex_prev_set>, 'v': <built-in function tvertex_v_set>, 'vnum': <built-in function tvertex_vnum_set>}
__weakref__ = <attribute '__weakref__' of 'tvertex' objects>

 
list of weak references to the object (if defined)

 
class tvertexPtr(tvertex)
   
 

 
 
Method resolution order:
tvertexPtr
tvertex
__builtin__.object

Methods defined here:
__init__(self, this)

 

Methods inherited from tvertex:
__del__(self, destroy=<built-in function delete_tvertex>)

 
__getattr__ lambda self, name

 
__repr__(self)

 
__setattr__ lambda self, name, value

 

Properties inherited from tvertex:
active

 
get = tvertex_active_get(...)

 
set = tvertex_active_set(...)

 
data_ptr

 
get = tvertex_data_ptr_get(...)

 
set = tvertex_data_ptr_set(...)

 
duplicate

 
get = tvertex_duplicate_get(...)

 
set = tvertex_duplicate_set(...)

 
mark

 
get = tvertex_mark_get(...)

 
set = tvertex_mark_set(...)

 
next

 
get = tvertex_next_get(...)

 
set = tvertex_next_set(...)

 
prev

 
get = tvertex_prev_get(...)

 
set = tvertex_prev_set(...)

 
v

 
get = tvertex_v_get(...)

 
set = tvertex_v_set(...)

 
vnum

 
get = tvertex_vnum_get(...)

 
set = tvertex_vnum_set(...)

 

Data and other attributes inherited from tvertex:
__dict__ = <dictproxy object at 0x25b3da8>

 
dictionary for instance variables (if defined)
__swig_getmethods__ = {'active': <built-in function tvertex_active_get>, 'data_ptr': <built-in function tvertex_data_ptr_get>, 'duplicate': <built-in function tvertex_duplicate_get>, 'mark': <built-in function tvertex_mark_get>, 'next': <built-in function tvertex_next_get>, 'prev': <built-in function tvertex_prev_get>, 'v': <built-in function tvertex_v_get>, 'vnum': <built-in function tvertex_vnum_get>}
__swig_setmethods__ = {'active': <built-in function tvertex_active_set>, 'data_ptr': <built-in function tvertex_data_ptr_set>, 'duplicate': <built-in function tvertex_duplicate_set>, 'mark': <built-in function tvertex_mark_set>, 'next': <built-in function tvertex_next_set>, 'prev': <built-in function tvertex_prev_set>, 'v': <built-in function tvertex_v_set>, 'vnum': <built-in function tvertex_vnum_set>}
__weakref__ = <attribute '__weakref__' of 'tvertex' objects>

 
list of weak references to the object (if defined)

 
Functions
       
SurfDiff_surf_leaks_test(...)

 
help(...)

 

 
Data
        TRI_CONCAVE = 1
TRI_CONVEX = 0
TRI_DUAL = 3
TRI_TORUS = 2
__package__ = None
pyXplorHelp = Type help() for interactive help, or help(object) for help about object.