surface area calculator
 
 SurfaceArea objects are usually created using the create_SurfaceArea 
function from the surfaceTools module.
 
constructor: 
  SurfaceArea(radii, atomSel)
   radii is list of length numAtoms containing atomic radii. These are 
   effective radii- any solvent radius should be pre-added.
   atomSelection is selection used in the surface area calculation.
              
 
  singleAtom(atom, altRadius=-1., saveData =0)
   calculate and return exposed solvent accessible surface area for the 
    specified atom. Only those neighboring atoms included in selection
    are included in this calculation.
    An alternative radius for this one atom can be optionally specified.
    also information from a previous calc can be passed in as saveData
     - this will speed things up if the atoms haven't moved too much.
 
  singleAtomDerivs(DerivList&);
   calculate derivatives wrt surface area info. This must be called after
    singleAtom, and before atoms have moved.
 
  saveData()
    return the SaveData info corresponding to the most recent singleAtom() 
    call.
 
 
  radius(Atom)        setRadius(Atom, num)
    get/set the effective radius of the specified atom.
 
  selection()         setSelection(atomSel);
    get/set atoms to include in surface area calc.
 
  simulation()
    get the simulation associated with selection()
 
  verbose()           setVerbose(val)  
    get/set the verbosity level (0-4) [default:0]
 
  useConvexHull()     setUseConvexHull(val)
    get/set the value of useConvexHull. This specifies whether the Convex Hull
    neighbor culling algorithm is used. See Fraczkiewicz and Braun, J. Comp. 
    Chem 3, 319 (1998) for more details. [default:0(off)]
 
  useSphereMetric()   setUseSphereMetric(boolVal)
  sphereGridSize()    setSphereGridSize(intVal)
    sphere metric approximation: divide sphere evenly (by surface are)
    into grids. For each neighbor find the closest grid and calculate a
    metric based on how much surface of cAtom is occluded. For each grid point
    retain only that atom which has the maximum metric.
    thus, the number of neighbors is reduced. [off by default]
 
  moveTol()           setMoveTol(floatVal)
    how much movement to allow before recalcing neighbor identity [default: 0.]
  
  setModified()
    notify object that atom positions have changed.
 
  updateTouchingList()
    update the array of lists of touching atoms.
 
 
 
 
# This file was created automatically by SWIG.
# Don't modify this file, modify the SWIG interface instead.
# This file is compatible with both classic and new-style classes.

Classes
		__builtin__.object CDSList_CDSList_SA_Arc CDSList_CDSList_SA_ArcPtr CDSList_SA_Arc CDSList_SA_ArcPtr CDSList_rc_Neighbor CDSList_rc_NeighborPtr SA_Arc SA_ArcPtr SA_ArcDerivInfo SA_ArcDerivInfoPtr SA_Neighbor SA_NeighborPtr SA_TouchingList SA_TouchingListPtr SA_Vertex SA_VertexPtr SurfaceArea SurfaceAreaPtr SurfaceAreaSaveData SurfaceAreaSaveDataPtr rc_ptr_SA_ArcDerivInfo rc_ptr_SA_ArcDerivInfoPtr rc_ptr_SA_Neighbor rc_ptr_SA_NeighborPtr rc_ptr_SA_Vertex rc_ptr_SA_VertexPtr rc_ptr_SurfaceAreaSaveData rc_ptr_SurfaceAreaSaveDataPtr   class CDSList_CDSList_SA_Arc(__builtin__.object)           Methods defined here: __del__(self, destroy=<built-in function delete_CDSList_CDSList_SA_Arc>)   __delitem__(*args)   __getattr__ lambda self, name   __getitem__(*args)   __getslice__(*args)   __init__(self, *args)   __len__(*args)   __repr__(self)   __setattr__ lambda self, name, value   __setitem__(*args)   help(*args)   Data and other attributes defined here: __dict__ = <dictproxy object at 0x27f7558>   dictionary for instance variables (if defined) __swig_getmethods__ = {} __swig_setmethods__ = {} __weakref__ = <attribute '__weakref__' of 'CDSList_CDSList_SA_Arc' objects>   list of weak references to the object (if defined)   class CDSList_CDSList_SA_ArcPtr(CDSList_CDSList_SA_Arc)           Method resolution order: CDSList_CDSList_SA_ArcPtr CDSList_CDSList_SA_Arc __builtin__.object Methods defined here: __init__(self, this)   Methods inherited from CDSList_CDSList_SA_Arc: __del__(self, destroy=<built-in function delete_CDSList_CDSList_SA_Arc>)   __delitem__(*args)   __getattr__ lambda self, name   __getitem__(*args)   __getslice__(*args)   __len__(*args)   __repr__(self)   __setattr__ lambda self, name, value   __setitem__(*args)   help(*args)   Data and other attributes inherited from CDSList_CDSList_SA_Arc: __dict__ = <dictproxy object at 0x27f7590>   dictionary for instance variables (if defined) __swig_getmethods__ = {} __swig_setmethods__ = {} __weakref__ = <attribute '__weakref__' of 'CDSList_CDSList_SA_Arc' objects>   list of weak references to the object (if defined)   class CDSList_SA_Arc(__builtin__.object)           Methods defined here: __del__(self, destroy=<built-in function delete_CDSList_SA_Arc>)   __delitem__(*args)   __getattr__ lambda self, name   __getitem__(*args)   __getslice__(*args)   __init__(self, *args)   __len__(*args)   __repr__(self)   __setattr__ lambda self, name, value   __setitem__(*args)   help(*args)   Data and other attributes defined here: __dict__ = <dictproxy object at 0x27f7868>   dictionary for instance variables (if defined) __swig_getmethods__ = {} __swig_setmethods__ = {} __weakref__ = <attribute '__weakref__' of 'CDSList_SA_Arc' objects>   list of weak references to the object (if defined)   class CDSList_SA_ArcPtr(CDSList_SA_Arc)           Method resolution order: CDSList_SA_ArcPtr CDSList_SA_Arc __builtin__.object Methods defined here: __init__(self, this)   Methods inherited from CDSList_SA_Arc: __del__(self, destroy=<built-in function delete_CDSList_SA_Arc>)   __delitem__(*args)   __getattr__ lambda self, name   __getitem__(*args)   __getslice__(*args)   __len__(*args)   __repr__(self)   __setattr__ lambda self, name, value   __setitem__(*args)   help(*args)   Data and other attributes inherited from CDSList_SA_Arc: __dict__ = <dictproxy object at 0x27f7558>   dictionary for instance variables (if defined) __swig_getmethods__ = {} __swig_setmethods__ = {} __weakref__ = <attribute '__weakref__' of 'CDSList_SA_Arc' objects>   list of weak references to the object (if defined)   class CDSList_rc_Neighbor(__builtin__.object)           Methods defined here: __del__(self, destroy=<built-in function delete_CDSList_rc_Neighbor>)   __delitem__(*args)   __getattr__ lambda self, name   __getitem__(*args)   __getslice__(*args)   __init__(self, *args)   __len__(*args)   __repr__(self)   __setattr__ lambda self, name, value   __setitem__(*args)   help(*args)   Data and other attributes defined here: __dict__ = <dictproxy object at 0x27f7590>   dictionary for instance variables (if defined) __swig_getmethods__ = {} __swig_setmethods__ = {} __weakref__ = <attribute '__weakref__' of 'CDSList_rc_Neighbor' objects>   list of weak references to the object (if defined)   class CDSList_rc_NeighborPtr(CDSList_rc_Neighbor)           Method resolution order: CDSList_rc_NeighborPtr CDSList_rc_Neighbor __builtin__.object Methods defined here: __init__(self, this)   Methods inherited from CDSList_rc_Neighbor: __del__(self, destroy=<built-in function delete_CDSList_rc_Neighbor>)   __delitem__(*args)   __getattr__ lambda self, name   __getitem__(*args)   __getslice__(*args)   __len__(*args)   __repr__(self)   __setattr__ lambda self, name, value   __setitem__(*args)   help(*args)   Data and other attributes inherited from CDSList_rc_Neighbor: __dict__ = <dictproxy object at 0x27f7868>   dictionary for instance variables (if defined) __swig_getmethods__ = {} __swig_setmethods__ = {} __weakref__ = <attribute '__weakref__' of 'CDSList_rc_Neighbor' objects>   list of weak references to the object (if defined)   class SA_Arc(__builtin__.object)           Methods defined here: __del__(self, destroy=<built-in function delete_SA_Arc>)   __getattr__ lambda self, name   __init__(self, *args)   __repr__(self)   __setattr__ lambda self, name, value   ni(*args)   nj(*args)   nk(*args)   Properties defined here: Omega   get = SA_Arc_Omega_get(...)   set = SA_Arc_Omega_set(...)   Phi   get = SA_Arc_Phi_get(...)   set = SA_Arc_Phi_set(...)   S   get = SA_Arc_S_get(...)   set = SA_Arc_S_set(...)   cosTheta   get = SA_Arc_cosTheta_get(...)   set = SA_Arc_cosTheta_set(...)   derivInfo   get = SA_Arc_derivInfo_get(...)   set = SA_Arc_derivInfo_set(...)   m   get = SA_Arc_m_get(...)   set = SA_Arc_m_set(...)   n   get = SA_Arc_n_get(...)   set = SA_Arc_n_set(...)   v0   get = SA_Arc_v0_get(...)   set = SA_Arc_v0_set(...)   v1   get = SA_Arc_v1_get(...)   set = SA_Arc_v1_set(...)   vertexIndex   get = SA_Arc_vertexIndex_get(...)   set = SA_Arc_vertexIndex_set(...)   Data and other attributes defined here: __dict__ = <dictproxy object at 0x27f72f0>   dictionary for instance variables (if defined) __swig_getmethods__ = {'Omega': <built-in function SA_Arc_Omega_get>, 'Phi': <built-in function SA_Arc_Phi_get>, 'S': <built-in function SA_Arc_S_get>, 'cosTheta': <built-in function SA_Arc_cosTheta_get>, 'derivInfo': <built-in function SA_Arc_derivInfo_get>, 'm': <built-in function SA_Arc_m_get>, 'n': <built-in function SA_Arc_n_get>, 'v0': <built-in function SA_Arc_v0_get>, 'v1': <built-in function SA_Arc_v1_get>, 'vertexIndex': <built-in function SA_Arc_vertexIndex_get>} __swig_setmethods__ = {'Omega': <built-in function SA_Arc_Omega_set>, 'Phi': <built-in function SA_Arc_Phi_set>, 'S': <built-in function SA_Arc_S_set>, 'cosTheta': <built-in function SA_Arc_cosTheta_set>, 'derivInfo': <built-in function SA_Arc_derivInfo_set>, 'm': <built-in function SA_Arc_m_set>, 'n': <built-in function SA_Arc_n_set>, 'v0': <built-in function SA_Arc_v0_set>, 'v1': <built-in function SA_Arc_v1_set>, 'vertexIndex': <built-in function SA_Arc_vertexIndex_set>} __weakref__ = <attribute '__weakref__' of 'SA_Arc' objects>   list of weak references to the object (if defined)   class SA_ArcDerivInfo(__builtin__.object)           Methods defined here: __del__(self, destroy=<built-in function delete_SA_ArcDerivInfo>)   __getattr__ lambda self, name   __init__(self, *args)   __repr__(self)   __setattr__ lambda self, name, value   Properties defined here: dP   get = SA_ArcDerivInfo_dP_get(...)   set = SA_ArcDerivInfo_dP_set(...)   dPhi   get = SA_ArcDerivInfo_dPhi_get(...)   set = SA_ArcDerivInfo_dPhi_set(...)   dPhiNext   get = SA_ArcDerivInfo_dPhiNext_get(...)   set = SA_ArcDerivInfo_dPhiNext_set(...)   dPhiPrev   get = SA_ArcDerivInfo_dPhiPrev_get(...)   set = SA_ArcDerivInfo_dPhiPrev_set(...)   dQ   get = SA_ArcDerivInfo_dQ_get(...)   set = SA_ArcDerivInfo_dQ_set(...)   dg   get = SA_ArcDerivInfo_dg_get(...)   set = SA_ArcDerivInfo_dg_set(...)   du   get = SA_ArcDerivInfo_du_get(...)   set = SA_ArcDerivInfo_du_set(...)   Data and other attributes defined here: __dict__ = <dictproxy object at 0x27f7558>   dictionary for instance variables (if defined) __swig_getmethods__ = {'dP': <built-in function SA_ArcDerivInfo_dP_get>, 'dPhi': <built-in function SA_ArcDerivInfo_dPhi_get>, 'dPhiNext': <built-in function SA_ArcDerivInfo_dPhiNext_get>, 'dPhiPrev': <built-in function SA_ArcDerivInfo_dPhiPrev_get>, 'dQ': <built-in function SA_ArcDerivInfo_dQ_get>, 'dg': <built-in function SA_ArcDerivInfo_dg_get>, 'du': <built-in function SA_ArcDerivInfo_du_get>} __swig_setmethods__ = {'dP': <built-in function SA_ArcDerivInfo_dP_set>, 'dPhi': <built-in function SA_ArcDerivInfo_dPhi_set>, 'dPhiNext': <built-in function SA_ArcDerivInfo_dPhiNext_set>, 'dPhiPrev': <built-in function SA_ArcDerivInfo_dPhiPrev_set>, 'dQ': <built-in function SA_ArcDerivInfo_dQ_set>, 'dg': <built-in function SA_ArcDerivInfo_dg_set>, 'du': <built-in function SA_ArcDerivInfo_du_set>} __weakref__ = <attribute '__weakref__' of 'SA_ArcDerivInfo' objects>   list of weak references to the object (if defined)   class SA_ArcDerivInfoPtr(SA_ArcDerivInfo)           Method resolution order: SA_ArcDerivInfoPtr SA_ArcDerivInfo __builtin__.object Methods defined here: __init__(self, this)   Methods inherited from SA_ArcDerivInfo: __del__(self, destroy=<built-in function delete_SA_ArcDerivInfo>)   __getattr__ lambda self, name   __repr__(self)   __setattr__ lambda self, name, value   Properties inherited from SA_ArcDerivInfo: dP   get = SA_ArcDerivInfo_dP_get(...)   set = SA_ArcDerivInfo_dP_set(...)   dPhi   get = SA_ArcDerivInfo_dPhi_get(...)   set = SA_ArcDerivInfo_dPhi_set(...)   dPhiNext   get = SA_ArcDerivInfo_dPhiNext_get(...)   set = SA_ArcDerivInfo_dPhiNext_set(...)   dPhiPrev   get = SA_ArcDerivInfo_dPhiPrev_get(...)   set = SA_ArcDerivInfo_dPhiPrev_set(...)   dQ   get = SA_ArcDerivInfo_dQ_get(...)   set = SA_ArcDerivInfo_dQ_set(...)   dg   get = SA_ArcDerivInfo_dg_get(...)   set = SA_ArcDerivInfo_dg_set(...)   du   get = SA_ArcDerivInfo_du_get(...)   set = SA_ArcDerivInfo_du_set(...)   Data and other attributes inherited from SA_ArcDerivInfo: __dict__ = <dictproxy object at 0x27f7e50>   dictionary for instance variables (if defined) __swig_getmethods__ = {'dP': <built-in function SA_ArcDerivInfo_dP_get>, 'dPhi': <built-in function SA_ArcDerivInfo_dPhi_get>, 'dPhiNext': <built-in function SA_ArcDerivInfo_dPhiNext_get>, 'dPhiPrev': <built-in function SA_ArcDerivInfo_dPhiPrev_get>, 'dQ': <built-in function SA_ArcDerivInfo_dQ_get>, 'dg': <built-in function SA_ArcDerivInfo_dg_get>, 'du': <built-in function SA_ArcDerivInfo_du_get>} __swig_setmethods__ = {'dP': <built-in function SA_ArcDerivInfo_dP_set>, 'dPhi': <built-in function SA_ArcDerivInfo_dPhi_set>, 'dPhiNext': <built-in function SA_ArcDerivInfo_dPhiNext_set>, 'dPhiPrev': <built-in function SA_ArcDerivInfo_dPhiPrev_set>, 'dQ': <built-in function SA_ArcDerivInfo_dQ_set>, 'dg': <built-in function SA_ArcDerivInfo_dg_set>, 'du': <built-in function SA_ArcDerivInfo_du_set>} __weakref__ = <attribute '__weakref__' of 'SA_ArcDerivInfo' objects>   list of weak references to the object (if defined)   class SA_ArcPtr(SA_Arc)           Method resolution order: SA_ArcPtr SA_Arc __builtin__.object Methods defined here: __init__(self, this)   Methods inherited from SA_Arc: __del__(self, destroy=<built-in function delete_SA_Arc>)   __getattr__ lambda self, name   __repr__(self)   __setattr__ lambda self, name, value   ni(*args)   nj(*args)   nk(*args)   Properties inherited from SA_Arc: Omega   get = SA_Arc_Omega_get(...)   set = SA_Arc_Omega_set(...)   Phi   get = SA_Arc_Phi_get(...)   set = SA_Arc_Phi_set(...)   S   get = SA_Arc_S_get(...)   set = SA_Arc_S_set(...)   cosTheta   get = SA_Arc_cosTheta_get(...)   set = SA_Arc_cosTheta_set(...)   derivInfo   get = SA_Arc_derivInfo_get(...)   set = SA_Arc_derivInfo_set(...)   m   get = SA_Arc_m_get(...)   set = SA_Arc_m_set(...)   n   get = SA_Arc_n_get(...)   set = SA_Arc_n_set(...)   v0   get = SA_Arc_v0_get(...)   set = SA_Arc_v0_set(...)   v1   get = SA_Arc_v1_get(...)   set = SA_Arc_v1_set(...)   vertexIndex   get = SA_Arc_vertexIndex_get(...)   set = SA_Arc_vertexIndex_set(...)   Data and other attributes inherited from SA_Arc: __dict__ = <dictproxy object at 0x27f7948>   dictionary for instance variables (if defined) __swig_getmethods__ = {'Omega': <built-in function SA_Arc_Omega_get>, 'Phi': <built-in function SA_Arc_Phi_get>, 'S': <built-in function SA_Arc_S_get>, 'cosTheta': <built-in function SA_Arc_cosTheta_get>, 'derivInfo': <built-in function SA_Arc_derivInfo_get>, 'm': <built-in function SA_Arc_m_get>, 'n': <built-in function SA_Arc_n_get>, 'v0': <built-in function SA_Arc_v0_get>, 'v1': <built-in function SA_Arc_v1_get>, 'vertexIndex': <built-in function SA_Arc_vertexIndex_get>} __swig_setmethods__ = {'Omega': <built-in function SA_Arc_Omega_set>, 'Phi': <built-in function SA_Arc_Phi_set>, 'S': <built-in function SA_Arc_S_set>, 'cosTheta': <built-in function SA_Arc_cosTheta_set>, 'derivInfo': <built-in function SA_Arc_derivInfo_set>, 'm': <built-in function SA_Arc_m_set>, 'n': <built-in function SA_Arc_n_set>, 'v0': <built-in function SA_Arc_v0_set>, 'v1': <built-in function SA_Arc_v1_set>, 'vertexIndex': <built-in function SA_Arc_vertexIndex_set>} __weakref__ = <attribute '__weakref__' of 'SA_Arc' objects>   list of weak references to the object (if defined)   class SA_Neighbor(__builtin__.object)           Methods defined here: __del__(self, destroy=<built-in function delete_SA_Neighbor>)   __eq__(*args)   __getattr__ lambda self, name   __init__(self, *args)   __repr__(self)   __setattr__ lambda self, name, value   pos(*args)   radius(*args)   update(*args)   Properties defined here: a   get = SA_Neighbor_a_get(...)   set = SA_Neighbor_a_set(...)   atom   get = SA_Neighbor_atom_get(...)   set = SA_Neighbor_atom_set(...)   d   get = SA_Neighbor_d_get(...)   set = SA_Neighbor_d_set(...)   g   get = SA_Neighbor_g_get(...)   set = SA_Neighbor_g_set(...)   index   get = SA_Neighbor_index_get(...)   set = SA_Neighbor_index_set(...)   pos_   get = SA_Neighbor_pos__get(...)   set = SA_Neighbor_pos__set(...)   r   get = SA_Neighbor_r_get(...)   set = SA_Neighbor_r_set(...)   u   get = SA_Neighbor_u_get(...)   set = SA_Neighbor_u_set(...)   Data and other attributes defined here: __dict__ = <dictproxy object at 0x27f7ef8>   dictionary for instance variables (if defined) __swig_getmethods__ = {'a': <built-in function SA_Neighbor_a_get>, 'atom': <built-in function SA_Neighbor_atom_get>, 'd': <built-in function SA_Neighbor_d_get>, 'g': <built-in function SA_Neighbor_g_get>, 'index': <built-in function SA_Neighbor_index_get>, 'pos_': <built-in function SA_Neighbor_pos__get>, 'r': <built-in function SA_Neighbor_r_get>, 'u': <built-in function SA_Neighbor_u_get>} __swig_setmethods__ = {'a': <built-in function SA_Neighbor_a_set>, 'atom': <built-in function SA_Neighbor_atom_set>, 'd': <built-in function SA_Neighbor_d_set>, 'g': <built-in function SA_Neighbor_g_set>, 'index': <built-in function SA_Neighbor_index_set>, 'pos_': <built-in function SA_Neighbor_pos__set>, 'r': <built-in function SA_Neighbor_r_set>, 'u': <built-in function SA_Neighbor_u_set>} __weakref__ = <attribute '__weakref__' of 'SA_Neighbor' objects>   list of weak references to the object (if defined)   class SA_NeighborPtr(SA_Neighbor)           Method resolution order: SA_NeighborPtr SA_Neighbor __builtin__.object Methods defined here: __init__(self, this)   Methods inherited from SA_Neighbor: __del__(self, destroy=<built-in function delete_SA_Neighbor>)   __eq__(*args)   __getattr__ lambda self, name   __repr__(self)   __setattr__ lambda self, name, value   pos(*args)   radius(*args)   update(*args)   Properties inherited from SA_Neighbor: a   get = SA_Neighbor_a_get(...)   set = SA_Neighbor_a_set(...)   atom   get = SA_Neighbor_atom_get(...)   set = SA_Neighbor_atom_set(...)   d   get = SA_Neighbor_d_get(...)   set = SA_Neighbor_d_set(...)   g   get = SA_Neighbor_g_get(...)   set = SA_Neighbor_g_set(...)   index   get = SA_Neighbor_index_get(...)   set = SA_Neighbor_index_set(...)   pos_   get = SA_Neighbor_pos__get(...)   set = SA_Neighbor_pos__set(...)   r   get = SA_Neighbor_r_get(...)   set = SA_Neighbor_r_set(...)   u   get = SA_Neighbor_u_get(...)   set = SA_Neighbor_u_set(...)   Data and other attributes inherited from SA_Neighbor: __dict__ = <dictproxy object at 0x27f7c58>   dictionary for instance variables (if defined) __swig_getmethods__ = {'a': <built-in function SA_Neighbor_a_get>, 'atom': <built-in function SA_Neighbor_atom_get>, 'd': <built-in function SA_Neighbor_d_get>, 'g': <built-in function SA_Neighbor_g_get>, 'index': <built-in function SA_Neighbor_index_get>, 'pos_': <built-in function SA_Neighbor_pos__get>, 'r': <built-in function SA_Neighbor_r_get>, 'u': <built-in function SA_Neighbor_u_get>} __swig_setmethods__ = {'a': <built-in function SA_Neighbor_a_set>, 'atom': <built-in function SA_Neighbor_atom_set>, 'd': <built-in function SA_Neighbor_d_set>, 'g': <built-in function SA_Neighbor_g_set>, 'index': <built-in function SA_Neighbor_index_set>, 'pos_': <built-in function SA_Neighbor_pos__set>, 'r': <built-in function SA_Neighbor_r_set>, 'u': <built-in function SA_Neighbor_u_set>} __weakref__ = <attribute '__weakref__' of 'SA_Neighbor' objects>   list of weak references to the object (if defined)   class SA_TouchingList(__builtin__.object)           Methods defined here: __del__(self, destroy=<built-in function delete_SA_TouchingList>)   __getattr__ lambda self, name   __init__(self, *args)   __repr__(self)   __setattr__ lambda self, name, value   update(*args)   Properties defined here: engulfed   get = SA_TouchingList_engulfed_get(...)   set = SA_TouchingList_engulfed_set(...)   posCache   get = SA_TouchingList_posCache_get(...)   set = SA_TouchingList_posCache_set(...)   Data and other attributes defined here: __dict__ = <dictproxy object at 0x27f7590>   dictionary for instance variables (if defined) __swig_getmethods__ = {'engulfed': <built-in function SA_TouchingList_engulfed_get>, 'posCache': <built-in function SA_TouchingList_posCache_get>} __swig_setmethods__ = {'engulfed': <built-in function SA_TouchingList_engulfed_set>, 'posCache': <built-in function SA_TouchingList_posCache_set>} __weakref__ = <attribute '__weakref__' of 'SA_TouchingList' objects>   list of weak references to the object (if defined)   class SA_TouchingListPtr(SA_TouchingList)           Method resolution order: SA_TouchingListPtr SA_TouchingList __builtin__.object Methods defined here: __init__(self, this)   Methods inherited from SA_TouchingList: __del__(self, destroy=<built-in function delete_SA_TouchingList>)   __getattr__ lambda self, name   __repr__(self)   __setattr__ lambda self, name, value   update(*args)   Properties inherited from SA_TouchingList: engulfed   get = SA_TouchingList_engulfed_get(...)   set = SA_TouchingList_engulfed_set(...)   posCache   get = SA_TouchingList_posCache_get(...)   set = SA_TouchingList_posCache_set(...)   Data and other attributes inherited from SA_TouchingList: __dict__ = <dictproxy object at 0x27f7e50>   dictionary for instance variables (if defined) __swig_getmethods__ = {'engulfed': <built-in function SA_TouchingList_engulfed_get>, 'posCache': <built-in function SA_TouchingList_posCache_get>} __swig_setmethods__ = {'engulfed': <built-in function SA_TouchingList_engulfed_set>, 'posCache': <built-in function SA_TouchingList_posCache_set>} __weakref__ = <attribute '__weakref__' of 'SA_TouchingList' objects>   list of weak references to the object (if defined)   class SA_Vertex(__builtin__.object)           Methods defined here: __del__(self, destroy=<built-in function delete_SA_Vertex>)   __getattr__ lambda self, name   __init__(self, *args)   __repr__(self)   __setattr__ lambda self, name, value   swapNeighbors(*args)   update(*args)   Properties defined here: cosPhi   get = SA_Vertex_cosPhi_get(...)   set = SA_Vertex_cosPhi_set(...)   eta   get = SA_Vertex_eta_get(...)   set = SA_Vertex_eta_set(...)   gamma   get = SA_Vertex_gamma_get(...)   set = SA_Vertex_gamma_set(...)   n0   get = SA_Vertex_n0_get(...)   set = SA_Vertex_n0_set(...)   n1   get = SA_Vertex_n1_get(...)   set = SA_Vertex_n1_set(...)   omega   get = SA_Vertex_omega_get(...)   set = SA_Vertex_omega_set(...)   pos   get = SA_Vertex_pos_get(...)   set = SA_Vertex_pos_set(...)   sinPhi   get = SA_Vertex_sinPhi_get(...)   set = SA_Vertex_sinPhi_set(...)   tau0   get = SA_Vertex_tau0_get(...)   set = SA_Vertex_tau0_set(...)   tau1   get = SA_Vertex_tau1_get(...)   set = SA_Vertex_tau1_set(...)   Data and other attributes defined here: __dict__ = <dictproxy object at 0x27f7830>   dictionary for instance variables (if defined) __swig_getmethods__ = {'cosPhi': <built-in function SA_Vertex_cosPhi_get>, 'eta': <built-in function SA_Vertex_eta_get>, 'gamma': <built-in function SA_Vertex_gamma_get>, 'n0': <built-in function SA_Vertex_n0_get>, 'n1': <built-in function SA_Vertex_n1_get>, 'omega': <built-in function SA_Vertex_omega_get>, 'pos': <built-in function SA_Vertex_pos_get>, 'sinPhi': <built-in function SA_Vertex_sinPhi_get>, 'tau0': <built-in function SA_Vertex_tau0_get>, 'tau1': <built-in function SA_Vertex_tau1_get>} __swig_setmethods__ = {'cosPhi': <built-in function SA_Vertex_cosPhi_set>, 'eta': <built-in function SA_Vertex_eta_set>, 'gamma': <built-in function SA_Vertex_gamma_set>, 'n0': <built-in function SA_Vertex_n0_set>, 'n1': <built-in function SA_Vertex_n1_set>, 'omega': <built-in function SA_Vertex_omega_set>, 'pos': <built-in function SA_Vertex_pos_set>, 'sinPhi': <built-in function SA_Vertex_sinPhi_set>, 'tau0': <built-in function SA_Vertex_tau0_set>, 'tau1': <built-in function SA_Vertex_tau1_set>} __weakref__ = <attribute '__weakref__' of 'SA_Vertex' objects>   list of weak references to the object (if defined)   class SA_VertexPtr(SA_Vertex)           Method resolution order: SA_VertexPtr SA_Vertex __builtin__.object Methods defined here: __init__(self, this)   Methods inherited from SA_Vertex: __del__(self, destroy=<built-in function delete_SA_Vertex>)   __getattr__ lambda self, name   __repr__(self)   __setattr__ lambda self, name, value   swapNeighbors(*args)   update(*args)   Properties inherited from SA_Vertex: cosPhi   get = SA_Vertex_cosPhi_get(...)   set = SA_Vertex_cosPhi_set(...)   eta   get = SA_Vertex_eta_get(...)   set = SA_Vertex_eta_set(...)   gamma   get = SA_Vertex_gamma_get(...)   set = SA_Vertex_gamma_set(...)   n0   get = SA_Vertex_n0_get(...)   set = SA_Vertex_n0_set(...)   n1   get = SA_Vertex_n1_get(...)   set = SA_Vertex_n1_set(...)   omega   get = SA_Vertex_omega_get(...)   set = SA_Vertex_omega_set(...)   pos   get = SA_Vertex_pos_get(...)   set = SA_Vertex_pos_set(...)   sinPhi   get = SA_Vertex_sinPhi_get(...)   set = SA_Vertex_sinPhi_set(...)   tau0   get = SA_Vertex_tau0_get(...)   set = SA_Vertex_tau0_set(...)   tau1   get = SA_Vertex_tau1_get(...)   set = SA_Vertex_tau1_set(...)   Data and other attributes inherited from SA_Vertex: __dict__ = <dictproxy object at 0x27f7f30>   dictionary for instance variables (if defined) __swig_getmethods__ = {'cosPhi': <built-in function SA_Vertex_cosPhi_get>, 'eta': <built-in function SA_Vertex_eta_get>, 'gamma': <built-in function SA_Vertex_gamma_get>, 'n0': <built-in function SA_Vertex_n0_get>, 'n1': <built-in function SA_Vertex_n1_get>, 'omega': <built-in function SA_Vertex_omega_get>, 'pos': <built-in function SA_Vertex_pos_get>, 'sinPhi': <built-in function SA_Vertex_sinPhi_get>, 'tau0': <built-in function SA_Vertex_tau0_get>, 'tau1': <built-in function SA_Vertex_tau1_get>} __swig_setmethods__ = {'cosPhi': <built-in function SA_Vertex_cosPhi_set>, 'eta': <built-in function SA_Vertex_eta_set>, 'gamma': <built-in function SA_Vertex_gamma_set>, 'n0': <built-in function SA_Vertex_n0_set>, 'n1': <built-in function SA_Vertex_n1_set>, 'omega': <built-in function SA_Vertex_omega_set>, 'pos': <built-in function SA_Vertex_pos_set>, 'sinPhi': <built-in function SA_Vertex_sinPhi_set>, 'tau0': <built-in function SA_Vertex_tau0_set>, 'tau1': <built-in function SA_Vertex_tau1_set>} __weakref__ = <attribute '__weakref__' of 'SA_Vertex' objects>   list of weak references to the object (if defined)   class SurfaceArea(__builtin__.object)           Methods defined here: __del__(self, destroy=<built-in function delete_SurfaceArea>)   __getattr__ lambda self, name   __init__(self, *args)   __repr__(self)   __setattr__ lambda self, name, value   help(*args)   moveTol(*args)   radius(*args)   saveData(*args)   selection(*args)   setMoveTol(*args)   setRadius(*args)   setSelection(*args)   setSphereGridSize(*args)   setUseConvexHull(*args)   setUseSphereMetric(*args)   setVerbose(*args)   simulation(*args)   singleAtom(*args)   singleAtomDerivs(*args)   sphereGridSize(*args)   useConvexHull(*args)   useSphereMetric(*args)   verbose(*args)   Data and other attributes defined here: __dict__ = <dictproxy object at 0x27f7e50>   dictionary for instance variables (if defined) __swig_getmethods__ = {} __swig_setmethods__ = {} __weakref__ = <attribute '__weakref__' of 'SurfaceArea' objects>   list of weak references to the object (if defined)   class SurfaceAreaPtr(SurfaceArea)           Method resolution order: SurfaceAreaPtr SurfaceArea __builtin__.object Methods defined here: __init__(self, this)   Methods inherited from SurfaceArea: __del__(self, destroy=<built-in function delete_SurfaceArea>)   __getattr__ lambda self, name   __repr__(self)   __setattr__ lambda self, name, value   help(*args)   moveTol(*args)   radius(*args)   saveData(*args)   selection(*args)   setMoveTol(*args)   setRadius(*args)   setSelection(*args)   setSphereGridSize(*args)   setUseConvexHull(*args)   setUseSphereMetric(*args)   setVerbose(*args)   simulation(*args)   singleAtom(*args)   singleAtomDerivs(*args)   sphereGridSize(*args)   useConvexHull(*args)   useSphereMetric(*args)   verbose(*args)   Data and other attributes inherited from SurfaceArea: __dict__ = <dictproxy object at 0x27f7b08>   dictionary for instance variables (if defined) __swig_getmethods__ = {} __swig_setmethods__ = {} __weakref__ = <attribute '__weakref__' of 'SurfaceArea' objects>   list of weak references to the object (if defined)   class SurfaceAreaSaveData(__builtin__.object)           Methods defined here: __del__(self, destroy=<built-in function delete_SurfaceAreaSaveData>)   __getattr__ lambda self, name   __init__(self, *args)   __repr__(self)   __setattr__ lambda self, name, value   Properties defined here: cAtomPos   get = SurfaceAreaSaveData_cAtomPos_get(...)   set = SurfaceAreaSaveData_cAtomPos_set(...)   isoContrib   get = SurfaceAreaSaveData_isoContrib_get(...)   set = SurfaceAreaSaveData_isoContrib_set(...)   isolated   get = SurfaceAreaSaveData_isolated_get(...)   set = SurfaceAreaSaveData_isolated_set(...)   paths   get = SurfaceAreaSaveData_paths_get(...)   set = SurfaceAreaSaveData_paths_set(...)   Data and other attributes defined here: __dict__ = <dictproxy object at 0x27f7b08>   dictionary for instance variables (if defined) __swig_getmethods__ = {'cAtomPos': <built-in function SurfaceAreaSaveData_cAtomPos_get>, 'isoContrib': <built-in function SurfaceAreaSaveData_isoContrib_get>, 'isolated': <built-in function SurfaceAreaSaveData_isolated_get>, 'paths': <built-in function SurfaceAreaSaveData_paths_get>} __swig_setmethods__ = {'cAtomPos': <built-in function SurfaceAreaSaveData_cAtomPos_set>, 'isoContrib': <built-in function SurfaceAreaSaveData_isoContrib_set>, 'isolated': <built-in function SurfaceAreaSaveData_isolated_set>, 'paths': <built-in function SurfaceAreaSaveData_paths_set>} __weakref__ = <attribute '__weakref__' of 'SurfaceAreaSaveData' objects>   list of weak references to the object (if defined)   class SurfaceAreaSaveDataPtr(SurfaceAreaSaveData)           Method resolution order: SurfaceAreaSaveDataPtr SurfaceAreaSaveData __builtin__.object Methods defined here: __init__(self, this)   Methods inherited from SurfaceAreaSaveData: __del__(self, destroy=<built-in function delete_SurfaceAreaSaveData>)   __getattr__ lambda self, name   __repr__(self)   __setattr__ lambda self, name, value   Properties inherited from SurfaceAreaSaveData: cAtomPos   get = SurfaceAreaSaveData_cAtomPos_get(...)   set = SurfaceAreaSaveData_cAtomPos_set(...)   isoContrib   get = SurfaceAreaSaveData_isoContrib_get(...)   set = SurfaceAreaSaveData_isoContrib_set(...)   isolated   get = SurfaceAreaSaveData_isolated_get(...)   set = SurfaceAreaSaveData_isolated_set(...)   paths   get = SurfaceAreaSaveData_paths_get(...)   set = SurfaceAreaSaveData_paths_set(...)   Data and other attributes inherited from SurfaceAreaSaveData: __dict__ = <dictproxy object at 0x27f7c58>   dictionary for instance variables (if defined) __swig_getmethods__ = {'cAtomPos': <built-in function SurfaceAreaSaveData_cAtomPos_get>, 'isoContrib': <built-in function SurfaceAreaSaveData_isoContrib_get>, 'isolated': <built-in function SurfaceAreaSaveData_isolated_get>, 'paths': <built-in function SurfaceAreaSaveData_paths_get>} __swig_setmethods__ = {'cAtomPos': <built-in function SurfaceAreaSaveData_cAtomPos_set>, 'isoContrib': <built-in function SurfaceAreaSaveData_isoContrib_set>, 'isolated': <built-in function SurfaceAreaSaveData_isolated_set>, 'paths': <built-in function SurfaceAreaSaveData_paths_set>} __weakref__ = <attribute '__weakref__' of 'SurfaceAreaSaveData' objects>   list of weak references to the object (if defined)   class rc_ptr_SA_ArcDerivInfo(__builtin__.object)           Methods defined here: __del__(self, destroy=<built-in function delete_rc_ptr_SA_ArcDerivInfo>)   __deref__(*args)   __getattr__ lambda self, name   __init__(self, *args)   __mul__(*args)   __repr__(self)   __setattr__ lambda self, name, value   count(*args)   decr(*args)   incr(*args)   ptr(*args)   reset(*args)   Properties defined here: dP   get = rc_ptr_SA_ArcDerivInfo_dP_get(...)   set = rc_ptr_SA_ArcDerivInfo_dP_set(...)   dPhi   get = rc_ptr_SA_ArcDerivInfo_dPhi_get(...)   set = rc_ptr_SA_ArcDerivInfo_dPhi_set(...)   dPhiNext   get = rc_ptr_SA_ArcDerivInfo_dPhiNext_get(...)   set = rc_ptr_SA_ArcDerivInfo_dPhiNext_set(...)   dPhiPrev   get = rc_ptr_SA_ArcDerivInfo_dPhiPrev_get(...)   set = rc_ptr_SA_ArcDerivInfo_dPhiPrev_set(...)   dQ   get = rc_ptr_SA_ArcDerivInfo_dQ_get(...)   set = rc_ptr_SA_ArcDerivInfo_dQ_set(...)   dg   get = rc_ptr_SA_ArcDerivInfo_dg_get(...)   set = rc_ptr_SA_ArcDerivInfo_dg_set(...)   du   get = rc_ptr_SA_ArcDerivInfo_du_get(...)   set = rc_ptr_SA_ArcDerivInfo_du_set(...)   Data and other attributes defined here: __dict__ = <dictproxy object at 0x27f7b08>   dictionary for instance variables (if defined) __swig_getmethods__ = {'dP': <built-in function rc_ptr_SA_ArcDerivInfo_dP_get>, 'dPhi': <built-in function rc_ptr_SA_ArcDerivInfo_dPhi_get>, 'dPhiNext': <built-in function rc_ptr_SA_ArcDerivInfo_dPhiNext_get>, 'dPhiPrev': <built-in function rc_ptr_SA_ArcDerivInfo_dPhiPrev_get>, 'dQ': <built-in function rc_ptr_SA_ArcDerivInfo_dQ_get>, 'dg': <built-in function rc_ptr_SA_ArcDerivInfo_dg_get>, 'du': <built-in function rc_ptr_SA_ArcDerivInfo_du_get>} __swig_setmethods__ = {'dP': <built-in function rc_ptr_SA_ArcDerivInfo_dP_set>, 'dPhi': <built-in function rc_ptr_SA_ArcDerivInfo_dPhi_set>, 'dPhiNext': <built-in function rc_ptr_SA_ArcDerivInfo_dPhiNext_set>, 'dPhiPrev': <built-in function rc_ptr_SA_ArcDerivInfo_dPhiPrev_set>, 'dQ': <built-in function rc_ptr_SA_ArcDerivInfo_dQ_set>, 'dg': <built-in function rc_ptr_SA_ArcDerivInfo_dg_set>, 'du': <built-in function rc_ptr_SA_ArcDerivInfo_du_set>} __weakref__ = <attribute '__weakref__' of 'rc_ptr_SA_ArcDerivInfo' objects>   list of weak references to the object (if defined)   class rc_ptr_SA_ArcDerivInfoPtr(rc_ptr_SA_ArcDerivInfo)           Method resolution order: rc_ptr_SA_ArcDerivInfoPtr rc_ptr_SA_ArcDerivInfo __builtin__.object Methods defined here: __init__(self, this)   Methods inherited from rc_ptr_SA_ArcDerivInfo: __del__(self, destroy=<built-in function delete_rc_ptr_SA_ArcDerivInfo>)   __deref__(*args)   __getattr__ lambda self, name   __mul__(*args)   __repr__(self)   __setattr__ lambda self, name, value   count(*args)   decr(*args)   incr(*args)   ptr(*args)   reset(*args)   Properties inherited from rc_ptr_SA_ArcDerivInfo: dP   get = rc_ptr_SA_ArcDerivInfo_dP_get(...)   set = rc_ptr_SA_ArcDerivInfo_dP_set(...)   dPhi   get = rc_ptr_SA_ArcDerivInfo_dPhi_get(...)   set = rc_ptr_SA_ArcDerivInfo_dPhi_set(...)   dPhiNext   get = rc_ptr_SA_ArcDerivInfo_dPhiNext_get(...)   set = rc_ptr_SA_ArcDerivInfo_dPhiNext_set(...)   dPhiPrev   get = rc_ptr_SA_ArcDerivInfo_dPhiPrev_get(...)   set = rc_ptr_SA_ArcDerivInfo_dPhiPrev_set(...)   dQ   get = rc_ptr_SA_ArcDerivInfo_dQ_get(...)   set = rc_ptr_SA_ArcDerivInfo_dQ_set(...)   dg   get = rc_ptr_SA_ArcDerivInfo_dg_get(...)   set = rc_ptr_SA_ArcDerivInfo_dg_set(...)   du   get = rc_ptr_SA_ArcDerivInfo_du_get(...)   set = rc_ptr_SA_ArcDerivInfo_du_set(...)   Data and other attributes inherited from rc_ptr_SA_ArcDerivInfo: __dict__ = <dictproxy object at 0x27f7e50>   dictionary for instance variables (if defined) __swig_getmethods__ = {'dP': <built-in function rc_ptr_SA_ArcDerivInfo_dP_get>, 'dPhi': <built-in function rc_ptr_SA_ArcDerivInfo_dPhi_get>, 'dPhiNext': <built-in function rc_ptr_SA_ArcDerivInfo_dPhiNext_get>, 'dPhiPrev': <built-in function rc_ptr_SA_ArcDerivInfo_dPhiPrev_get>, 'dQ': <built-in function rc_ptr_SA_ArcDerivInfo_dQ_get>, 'dg': <built-in function rc_ptr_SA_ArcDerivInfo_dg_get>, 'du': <built-in function rc_ptr_SA_ArcDerivInfo_du_get>} __swig_setmethods__ = {'dP': <built-in function rc_ptr_SA_ArcDerivInfo_dP_set>, 'dPhi': <built-in function rc_ptr_SA_ArcDerivInfo_dPhi_set>, 'dPhiNext': <built-in function rc_ptr_SA_ArcDerivInfo_dPhiNext_set>, 'dPhiPrev': <built-in function rc_ptr_SA_ArcDerivInfo_dPhiPrev_set>, 'dQ': <built-in function rc_ptr_SA_ArcDerivInfo_dQ_set>, 'dg': <built-in function rc_ptr_SA_ArcDerivInfo_dg_set>, 'du': <built-in function rc_ptr_SA_ArcDerivInfo_du_set>} __weakref__ = <attribute '__weakref__' of 'rc_ptr_SA_ArcDerivInfo' objects>   list of weak references to the object (if defined)   class rc_ptr_SA_Neighbor(__builtin__.object)           Methods defined here: __del__(self, destroy=<built-in function delete_rc_ptr_SA_Neighbor>)   __deref__(*args)   __eq__(*args)   __getattr__ lambda self, name   __init__(self, *args)   __mul__(*args)   __repr__(self)   __setattr__ lambda self, name, value   count(*args)   decr(*args)   incr(*args)   pos(*args)   ptr(*args)   radius(*args)   reset(*args)   update(*args)   Properties defined here: a   get = rc_ptr_SA_Neighbor_a_get(...)   set = rc_ptr_SA_Neighbor_a_set(...)   atom   get = rc_ptr_SA_Neighbor_atom_get(...)   set = rc_ptr_SA_Neighbor_atom_set(...)   d   get = rc_ptr_SA_Neighbor_d_get(...)   set = rc_ptr_SA_Neighbor_d_set(...)   g   get = rc_ptr_SA_Neighbor_g_get(...)   set = rc_ptr_SA_Neighbor_g_set(...)   index   get = rc_ptr_SA_Neighbor_index_get(...)   set = rc_ptr_SA_Neighbor_index_set(...)   pos_   get = rc_ptr_SA_Neighbor_pos__get(...)   set = rc_ptr_SA_Neighbor_pos__set(...)   r   get = rc_ptr_SA_Neighbor_r_get(...)   set = rc_ptr_SA_Neighbor_r_set(...)   u   get = rc_ptr_SA_Neighbor_u_get(...)   set = rc_ptr_SA_Neighbor_u_set(...)   Data and other attributes defined here: __dict__ = <dictproxy object at 0x27f7ef8>   dictionary for instance variables (if defined) __swig_getmethods__ = {'a': <built-in function rc_ptr_SA_Neighbor_a_get>, 'atom': <built-in function rc_ptr_SA_Neighbor_atom_get>, 'd': <built-in function rc_ptr_SA_Neighbor_d_get>, 'g': <built-in function rc_ptr_SA_Neighbor_g_get>, 'index': <built-in function rc_ptr_SA_Neighbor_index_get>, 'pos_': <built-in function rc_ptr_SA_Neighbor_pos__get>, 'r': <built-in function rc_ptr_SA_Neighbor_r_get>, 'u': <built-in function rc_ptr_SA_Neighbor_u_get>} __swig_setmethods__ = {'a': <built-in function rc_ptr_SA_Neighbor_a_set>, 'atom': <built-in function rc_ptr_SA_Neighbor_atom_set>, 'd': <built-in function rc_ptr_SA_Neighbor_d_set>, 'g': <built-in function rc_ptr_SA_Neighbor_g_set>, 'index': <built-in function rc_ptr_SA_Neighbor_index_set>, 'pos_': <built-in function rc_ptr_SA_Neighbor_pos__set>, 'r': <built-in function rc_ptr_SA_Neighbor_r_set>, 'u': <built-in function rc_ptr_SA_Neighbor_u_set>} __weakref__ = <attribute '__weakref__' of 'rc_ptr_SA_Neighbor' objects>   list of weak references to the object (if defined)   class rc_ptr_SA_NeighborPtr(rc_ptr_SA_Neighbor)           Method resolution order: rc_ptr_SA_NeighborPtr rc_ptr_SA_Neighbor __builtin__.object Methods defined here: __init__(self, this)   Methods inherited from rc_ptr_SA_Neighbor: __del__(self, destroy=<built-in function delete_rc_ptr_SA_Neighbor>)   __deref__(*args)   __eq__(*args)   __getattr__ lambda self, name   __mul__(*args)   __repr__(self)   __setattr__ lambda self, name, value   count(*args)   decr(*args)   incr(*args)   pos(*args)   ptr(*args)   radius(*args)   reset(*args)   update(*args)   Properties inherited from rc_ptr_SA_Neighbor: a   get = rc_ptr_SA_Neighbor_a_get(...)   set = rc_ptr_SA_Neighbor_a_set(...)   atom   get = rc_ptr_SA_Neighbor_atom_get(...)   set = rc_ptr_SA_Neighbor_atom_set(...)   d   get = rc_ptr_SA_Neighbor_d_get(...)   set = rc_ptr_SA_Neighbor_d_set(...)   g   get = rc_ptr_SA_Neighbor_g_get(...)   set = rc_ptr_SA_Neighbor_g_set(...)   index   get = rc_ptr_SA_Neighbor_index_get(...)   set = rc_ptr_SA_Neighbor_index_set(...)   pos_   get = rc_ptr_SA_Neighbor_pos__get(...)   set = rc_ptr_SA_Neighbor_pos__set(...)   r   get = rc_ptr_SA_Neighbor_r_get(...)   set = rc_ptr_SA_Neighbor_r_set(...)   u   get = rc_ptr_SA_Neighbor_u_get(...)   set = rc_ptr_SA_Neighbor_u_set(...)   Data and other attributes inherited from rc_ptr_SA_Neighbor: __dict__ = <dictproxy object at 0x27f7b08>   dictionary for instance variables (if defined) __swig_getmethods__ = {'a': <built-in function rc_ptr_SA_Neighbor_a_get>, 'atom': <built-in function rc_ptr_SA_Neighbor_atom_get>, 'd': <built-in function rc_ptr_SA_Neighbor_d_get>, 'g': <built-in function rc_ptr_SA_Neighbor_g_get>, 'index': <built-in function rc_ptr_SA_Neighbor_index_get>, 'pos_': <built-in function rc_ptr_SA_Neighbor_pos__get>, 'r': <built-in function rc_ptr_SA_Neighbor_r_get>, 'u': <built-in function rc_ptr_SA_Neighbor_u_get>} __swig_setmethods__ = {'a': <built-in function rc_ptr_SA_Neighbor_a_set>, 'atom': <built-in function rc_ptr_SA_Neighbor_atom_set>, 'd': <built-in function rc_ptr_SA_Neighbor_d_set>, 'g': <built-in function rc_ptr_SA_Neighbor_g_set>, 'index': <built-in function rc_ptr_SA_Neighbor_index_set>, 'pos_': <built-in function rc_ptr_SA_Neighbor_pos__set>, 'r': <built-in function rc_ptr_SA_Neighbor_r_set>, 'u': <built-in function rc_ptr_SA_Neighbor_u_set>} __weakref__ = <attribute '__weakref__' of 'rc_ptr_SA_Neighbor' objects>   list of weak references to the object (if defined)   class rc_ptr_SA_Vertex(__builtin__.object)           Methods defined here: __del__(self, destroy=<built-in function delete_rc_ptr_SA_Vertex>)   __deref__(*args)   __getattr__ lambda self, name   __init__(self, *args)   __mul__(*args)   __repr__(self)   __setattr__ lambda self, name, value   count(*args)   decr(*args)   incr(*args)   ptr(*args)   reset(*args)   swapNeighbors(*args)   update(*args)   Properties defined here: cosPhi   get = rc_ptr_SA_Vertex_cosPhi_get(...)   set = rc_ptr_SA_Vertex_cosPhi_set(...)   eta   get = rc_ptr_SA_Vertex_eta_get(...)   set = rc_ptr_SA_Vertex_eta_set(...)   gamma   get = rc_ptr_SA_Vertex_gamma_get(...)   set = rc_ptr_SA_Vertex_gamma_set(...)   n0   get = rc_ptr_SA_Vertex_n0_get(...)   set = rc_ptr_SA_Vertex_n0_set(...)   n1   get = rc_ptr_SA_Vertex_n1_get(...)   set = rc_ptr_SA_Vertex_n1_set(...)   omega   get = rc_ptr_SA_Vertex_omega_get(...)   set = rc_ptr_SA_Vertex_omega_set(...)   pos   get = rc_ptr_SA_Vertex_pos_get(...)   set = rc_ptr_SA_Vertex_pos_set(...)   sinPhi   get = rc_ptr_SA_Vertex_sinPhi_get(...)   set = rc_ptr_SA_Vertex_sinPhi_set(...)   tau0   get = rc_ptr_SA_Vertex_tau0_get(...)   set = rc_ptr_SA_Vertex_tau0_set(...)   tau1   get = rc_ptr_SA_Vertex_tau1_get(...)   set = rc_ptr_SA_Vertex_tau1_set(...)   Data and other attributes defined here: __dict__ = <dictproxy object at 0x27f7b08>   dictionary for instance variables (if defined) __swig_getmethods__ = {'cosPhi': <built-in function rc_ptr_SA_Vertex_cosPhi_get>, 'eta': <built-in function rc_ptr_SA_Vertex_eta_get>, 'gamma': <built-in function rc_ptr_SA_Vertex_gamma_get>, 'n0': <built-in function rc_ptr_SA_Vertex_n0_get>, 'n1': <built-in function rc_ptr_SA_Vertex_n1_get>, 'omega': <built-in function rc_ptr_SA_Vertex_omega_get>, 'pos': <built-in function rc_ptr_SA_Vertex_pos_get>, 'sinPhi': <built-in function rc_ptr_SA_Vertex_sinPhi_get>, 'tau0': <built-in function rc_ptr_SA_Vertex_tau0_get>, 'tau1': <built-in function rc_ptr_SA_Vertex_tau1_get>} __swig_setmethods__ = {'cosPhi': <built-in function rc_ptr_SA_Vertex_cosPhi_set>, 'eta': <built-in function rc_ptr_SA_Vertex_eta_set>, 'gamma': <built-in function rc_ptr_SA_Vertex_gamma_set>, 'n0': <built-in function rc_ptr_SA_Vertex_n0_set>, 'n1': <built-in function rc_ptr_SA_Vertex_n1_set>, 'omega': <built-in function rc_ptr_SA_Vertex_omega_set>, 'pos': <built-in function rc_ptr_SA_Vertex_pos_set>, 'sinPhi': <built-in function rc_ptr_SA_Vertex_sinPhi_set>, 'tau0': <built-in function rc_ptr_SA_Vertex_tau0_set>, 'tau1': <built-in function rc_ptr_SA_Vertex_tau1_set>} __weakref__ = <attribute '__weakref__' of 'rc_ptr_SA_Vertex' objects>   list of weak references to the object (if defined)   class rc_ptr_SA_VertexPtr(rc_ptr_SA_Vertex)           Method resolution order: rc_ptr_SA_VertexPtr rc_ptr_SA_Vertex __builtin__.object Methods defined here: __init__(self, this)   Methods inherited from rc_ptr_SA_Vertex: __del__(self, destroy=<built-in function delete_rc_ptr_SA_Vertex>)   __deref__(*args)   __getattr__ lambda self, name   __mul__(*args)   __repr__(self)   __setattr__ lambda self, name, value   count(*args)   decr(*args)   incr(*args)   ptr(*args)   reset(*args)   swapNeighbors(*args)   update(*args)   Properties inherited from rc_ptr_SA_Vertex: cosPhi   get = rc_ptr_SA_Vertex_cosPhi_get(...)   set = rc_ptr_SA_Vertex_cosPhi_set(...)   eta   get = rc_ptr_SA_Vertex_eta_get(...)   set = rc_ptr_SA_Vertex_eta_set(...)   gamma   get = rc_ptr_SA_Vertex_gamma_get(...)   set = rc_ptr_SA_Vertex_gamma_set(...)   n0   get = rc_ptr_SA_Vertex_n0_get(...)   set = rc_ptr_SA_Vertex_n0_set(...)   n1   get = rc_ptr_SA_Vertex_n1_get(...)   set = rc_ptr_SA_Vertex_n1_set(...)   omega   get = rc_ptr_SA_Vertex_omega_get(...)   set = rc_ptr_SA_Vertex_omega_set(...)   pos   get = rc_ptr_SA_Vertex_pos_get(...)   set = rc_ptr_SA_Vertex_pos_set(...)   sinPhi   get = rc_ptr_SA_Vertex_sinPhi_get(...)   set = rc_ptr_SA_Vertex_sinPhi_set(...)   tau0   get = rc_ptr_SA_Vertex_tau0_get(...)   set = rc_ptr_SA_Vertex_tau0_set(...)   tau1   get = rc_ptr_SA_Vertex_tau1_get(...)   set = rc_ptr_SA_Vertex_tau1_set(...)   Data and other attributes inherited from rc_ptr_SA_Vertex: __dict__ = <dictproxy object at 0x27f7b08>   dictionary for instance variables (if defined) __swig_getmethods__ = {'cosPhi': <built-in function rc_ptr_SA_Vertex_cosPhi_get>, 'eta': <built-in function rc_ptr_SA_Vertex_eta_get>, 'gamma': <built-in function rc_ptr_SA_Vertex_gamma_get>, 'n0': <built-in function rc_ptr_SA_Vertex_n0_get>, 'n1': <built-in function rc_ptr_SA_Vertex_n1_get>, 'omega': <built-in function rc_ptr_SA_Vertex_omega_get>, 'pos': <built-in function rc_ptr_SA_Vertex_pos_get>, 'sinPhi': <built-in function rc_ptr_SA_Vertex_sinPhi_get>, 'tau0': <built-in function rc_ptr_SA_Vertex_tau0_get>, 'tau1': <built-in function rc_ptr_SA_Vertex_tau1_get>} __swig_setmethods__ = {'cosPhi': <built-in function rc_ptr_SA_Vertex_cosPhi_set>, 'eta': <built-in function rc_ptr_SA_Vertex_eta_set>, 'gamma': <built-in function rc_ptr_SA_Vertex_gamma_set>, 'n0': <built-in function rc_ptr_SA_Vertex_n0_set>, 'n1': <built-in function rc_ptr_SA_Vertex_n1_set>, 'omega': <built-in function rc_ptr_SA_Vertex_omega_set>, 'pos': <built-in function rc_ptr_SA_Vertex_pos_set>, 'sinPhi': <built-in function rc_ptr_SA_Vertex_sinPhi_set>, 'tau0': <built-in function rc_ptr_SA_Vertex_tau0_set>, 'tau1': <built-in function rc_ptr_SA_Vertex_tau1_set>} __weakref__ = <attribute '__weakref__' of 'rc_ptr_SA_Vertex' objects>   list of weak references to the object (if defined)   class rc_ptr_SurfaceAreaSaveData(__builtin__.object)           Methods defined here: __del__(self, destroy=<built-in function delete_rc_ptr_SurfaceAreaSaveData>)   __deref__(*args)   __getattr__ lambda self, name   __init__(self, *args)   __mul__(*args)   __repr__(self)   __setattr__ lambda self, name, value   count(*args)   decr(*args)   incr(*args)   ptr(*args)   reset(*args)   Properties defined here: cAtomPos   get = rc_ptr_SurfaceAreaSaveData_cAtomPos_get(...)   set = rc_ptr_SurfaceAreaSaveData_cAtomPos_set(...)   isoContrib   get = rc_ptr_SurfaceAreaSaveData_isoContrib_get(...)   set = rc_ptr_SurfaceAreaSaveData_isoContrib_set(...)   isolated   get = rc_ptr_SurfaceAreaSaveData_isolated_get(...)   set = rc_ptr_SurfaceAreaSaveData_isolated_set(...)   paths   get = rc_ptr_SurfaceAreaSaveData_paths_get(...)   set = rc_ptr_SurfaceAreaSaveData_paths_set(...)   Data and other attributes defined here: __dict__ = <dictproxy object at 0x27f7b08>   dictionary for instance variables (if defined) __swig_getmethods__ = {'cAtomPos': <built-in function rc_ptr_SurfaceAreaSaveData_cAtomPos_get>, 'isoContrib': <built-in function rc_ptr_SurfaceAreaSaveData_isoContrib_get>, 'isolated': <built-in function rc_ptr_SurfaceAreaSaveData_isolated_get>, 'paths': <built-in function rc_ptr_SurfaceAreaSaveData_paths_get>} __swig_setmethods__ = {'cAtomPos': <built-in function rc_ptr_SurfaceAreaSaveData_cAtomPos_set>, 'isoContrib': <built-in function rc_ptr_SurfaceAreaSaveData_isoContrib_set>, 'isolated': <built-in function rc_ptr_SurfaceAreaSaveData_isolated_set>, 'paths': <built-in function rc_ptr_SurfaceAreaSaveData_paths_set>} __weakref__ = <attribute '__weakref__' of 'rc_ptr_SurfaceAreaSaveData' objects>   list of weak references to the object (if defined)   class rc_ptr_SurfaceAreaSaveDataPtr(rc_ptr_SurfaceAreaSaveData)           Method resolution order: rc_ptr_SurfaceAreaSaveDataPtr rc_ptr_SurfaceAreaSaveData __builtin__.object Methods defined here: __init__(self, this)   Methods inherited from rc_ptr_SurfaceAreaSaveData: __del__(self, destroy=<built-in function delete_rc_ptr_SurfaceAreaSaveData>)   __deref__(*args)   __getattr__ lambda self, name   __mul__(*args)   __repr__(self)   __setattr__ lambda self, name, value   count(*args)   decr(*args)   incr(*args)   ptr(*args)   reset(*args)   Properties inherited from rc_ptr_SurfaceAreaSaveData: cAtomPos   get = rc_ptr_SurfaceAreaSaveData_cAtomPos_get(...)   set = rc_ptr_SurfaceAreaSaveData_cAtomPos_set(...)   isoContrib   get = rc_ptr_SurfaceAreaSaveData_isoContrib_get(...)   set = rc_ptr_SurfaceAreaSaveData_isoContrib_set(...)   isolated   get = rc_ptr_SurfaceAreaSaveData_isolated_get(...)   set = rc_ptr_SurfaceAreaSaveData_isolated_set(...)   paths   get = rc_ptr_SurfaceAreaSaveData_paths_get(...)   set = rc_ptr_SurfaceAreaSaveData_paths_set(...)   Data and other attributes inherited from rc_ptr_SurfaceAreaSaveData: __dict__ = <dictproxy object at 0x27f7b08>   dictionary for instance variables (if defined) __swig_getmethods__ = {'cAtomPos': <built-in function rc_ptr_SurfaceAreaSaveData_cAtomPos_get>, 'isoContrib': <built-in function rc_ptr_SurfaceAreaSaveData_isoContrib_get>, 'isolated': <built-in function rc_ptr_SurfaceAreaSaveData_isolated_get>, 'paths': <built-in function rc_ptr_SurfaceAreaSaveData_paths_get>} __swig_setmethods__ = {'cAtomPos': <built-in function rc_ptr_SurfaceAreaSaveData_cAtomPos_set>, 'isoContrib': <built-in function rc_ptr_SurfaceAreaSaveData_isoContrib_set>, 'isolated': <built-in function rc_ptr_SurfaceAreaSaveData_isolated_set>, 'paths': <built-in function rc_ptr_SurfaceAreaSaveData_paths_set>} __weakref__ = <attribute '__weakref__' of 'rc_ptr_SurfaceAreaSaveData' objects>   list of weak references to the object (if defined)

Functions
		help(...)

Data
		__package__ = None pyXplorHelp = Type help() for interactive help, or help(object) for help about object.