Python: module camshift

camshift

[ no help available yet] # This file was automatically generated by SWIG (http://www.swig.org). # Version 4.0.2 # # Do not make changes to this file unless you know what you are doing--modify # the SWIG interface file instead.

Classes

builtins.object

AminoAcid
DeriveData

CamShift(builtins.object)

CamShift1

class AminoAcid(builtins.object)

AminoAcid(*args, **kwargs)

Methods defined here:

__init__(self, *args, **kwargs): Initialize self. See help(type(self)) for accurate signature.

__repr__ = _swig_repr(self)

Static methods defined here:

__swig_destroy__ = delete_AminoAcid(...)

his_ring(*args, **kwargs) -> 'CDSList< String >'

isSP2(*args, **kwargs) -> 'bool'

is_backbone_h(*args, **kwargs) -> 'bool'

is_backbone_ha(*args, **kwargs) -> 'bool'

is_chi1_cx(*args, **kwargs) -> 'bool'

phe_ring(*args, **kwargs) -> 'CDSList< String >'

sidechain_ala(*args, **kwargs) -> 'CDSList< String > const &'

sidechain_arg(*args, **kwargs) -> 'CDSList< String > const &'

sidechain_asn(*args, **kwargs) -> 'CDSList< String > const &'

sidechain_asp(*args, **kwargs) -> 'CDSList< String > const &'

sidechain_cys(*args, **kwargs) -> 'CDSList< String > const &'

sidechain_gln(*args, **kwargs) -> 'CDSList< String > const &'

sidechain_glu(*args, **kwargs) -> 'CDSList< String > const &'

sidechain_gly(*args, **kwargs) -> 'CDSList< String > const &'

sidechain_his(*args, **kwargs) -> 'CDSList< String > const &'

sidechain_ile(*args, **kwargs) -> 'CDSList< String > const &'

sidechain_leu(*args, **kwargs) -> 'CDSList< String > const &'

sidechain_lys(*args, **kwargs) -> 'CDSList< String > const &'

sidechain_met(*args, **kwargs) -> 'CDSList< String > const &'

sidechain_phe(*args, **kwargs) -> 'CDSList< String > const &'

sidechain_pro(*args, **kwargs) -> 'CDSList< String > const &'

sidechain_ser(*args, **kwargs) -> 'CDSList< String > const &'

sidechain_thr(*args, **kwargs) -> 'CDSList< String > const &'

sidechain_trp(*args, **kwargs) -> 'CDSList< String > const &'

sidechain_tyr(*args, **kwargs) -> 'CDSList< String > const &'

sidechain_val(*args, **kwargs) -> 'CDSList< String > const &'

trp1_ring(*args, **kwargs) -> 'CDSList< String >'

trp2_ring(*args, **kwargs) -> 'CDSList< String >'

tyr_ring(*args, **kwargs) -> 'CDSList< String >'

use_names(*args, **kwargs) -> 'void'

Data descriptors defined here:

__dict__: dictionary for instance variables (if defined)

__weakref__: list of weak references to the object (if defined)

name_kind

thisown: The membership flag

Data and other attributes defined here:

CHARMM = 1

CTER = 2

IUPAC = 0

NTER = 1

STD = 0

class CamShift1(CamShift)

CamShift1(*args, **kwargs)

Method resolution order:: CamShift1; CamShift; builtins.object

Methods defined here:

__init__(self, *args, **kwargs): Initialize self. See help(type(self)) for accurate signature.

__repr__ = _swig_repr(self)

addObservedChemicalShift(self, *args, **kwargs) -> 'void'

addResidue(self, *args, **kwargs) -> 'void'

assignAllCloseAtoms(self, *args, **kwargs) -> 'void'

assignCloseAtoms(self, *args, **kwargs) -> 'void'

cTerminus(self, *args, **kwargs) -> 'bool'

energy(self, *args, **kwargs) -> 'double'

flatBottomConst(self, *args, **kwargs) -> 'float_type const'

fullPredictor(self, *args, **kwargs) -> 'bool const'

getAllChemicalShifts(self, *args, **kwargs) -> 'void'

getAtomChemicalShifts(self, *args, **kwargs) -> 'CDSVector< double >'

get_debugatom1(self, *args, **kwargs) -> 'int'

get_debugatom2(self, *args, **kwargs) -> 'int'

get_distcutoff(self, *args, **kwargs) -> 'double'

get_forcecutoff(self, *args, **kwargs) -> 'double'

get_shiftcutoff(self, *args, **kwargs) -> 'double'

init(self, *args, **kwargs) -> 'void'

isSP2(self, *args, **kwargs) -> 'bool'

maxShiftDevMult(self, *args, **kwargs) -> 'float_type const'

movedTooMuch(self, *args, **kwargs) -> 'bool'

nTerminus(self, *args, **kwargs) -> 'bool'

printChemicalShifts(self, *args, **kwargs) -> 'void'

printEnergy(self, *args, **kwargs) -> 'void'

reserveMem(self, *args, **kwargs) -> 'void'

setFlatBottomConst(self, *args, **kwargs) -> 'void'

setFullPredictor(self, *args, **kwargs) -> 'void'

setMaxShiftDevMult(self, *args, **kwargs) -> 'void'

setObservedChemicalShift(self, *args, **kwargs) -> 'void'

set_debugatoms(self, *args, **kwargs) -> 'void'

set_distcutoff(self, *args, **kwargs) -> 'void'

set_forcecutoff(self, *args, **kwargs) -> 'void'

set_lambda(self, *args, **kwargs) -> 'void'

set_shiftcutoff(self, *args, **kwargs) -> 'void'

testCompleteness(self, *args, **kwargs) -> 'void'

updateValues(self, *args, **kwargs) -> 'void'

Static methods defined here:

__swig_destroy__ = delete_CamShift1(...)

Data descriptors defined here:

thisown: The membership flag

Data and other attributes defined here:

x = 0

y = 1

z = 2

Methods inherited from CamShift:

calcDerivs(self, *args, **kwargs) -> 'bool const'

chemicalShift(self, *args, **kwargs) -> 'float_type'

chemicalShifts(self, *args, **kwargs) -> 'CDSVector< float_type >'

getDerivative(self, *args, **kwargs) -> 'CDSList< Pair< int,Vec3 > >'

selection(self, *args, **kwargs) -> 'AtomSel'

setCalcDerivs(self, *args, **kwargs) -> 'void'

setTermsUsed(self, *args, **kwargs) -> 'void'

termsUsed(self, *args, **kwargs) -> 'int const'

Static methods inherited from CamShift:

generator(*args, **kwargs) -> 'CamShift *'

stringToType(*args, **kwargs) -> 'CamShift::AtomType'

typeToString(*args, **kwargs) -> 'String'

Data descriptors inherited from CamShift:

__dict__: dictionary for instance variables (if defined)

__weakref__: list of weak references to the object (if defined)

Data and other attributes inherited from CamShift:

AtomTypeSize = 7

C = 4

CA = 2

CB = 6

HA = 3

HN = 1

N = 0

O = 5

TERM_CONST = 1024

TERM_CURR = 2

TERM_DIHE = 128

TERM_DISULF = 512

TERM_EXTRA = 16

TERM_HBOND = 256

TERM_NBOND = 32

TERM_NEXT = 4

TERM_PREV = 1

TERM_RING = 64

TERM_SIDE = 8

class DeriveData(builtins.object)

DeriveData(*args, **kwargs)

Methods defined here:

__init__(self, *args, **kwargs): Initialize self. See help(type(self)) for accurate signature.

__repr__ = _swig_repr(self)

Static methods defined here:

__swig_destroy__ = delete_DeriveData(...)

Data descriptors defined here:

__dict__: dictionary for instance variables (if defined)

__weakref__: list of weak references to the object (if defined)

atomnum

data

restraint_residue_number

thisown: The membership flag

Functions

AminoAcid_his_ring(*args) -> 'CDSList< String >'

AminoAcid_isSP2(*args, **kwargs) -> 'bool'

AminoAcid_is_backbone_h(*args, **kwargs) -> 'bool'

AminoAcid_is_backbone_ha(*args, **kwargs) -> 'bool'

AminoAcid_is_chi1_cx(*args, **kwargs) -> 'bool'

AminoAcid_phe_ring(*args) -> 'CDSList< String >'

AminoAcid_sidechain_ala(*args, **kwargs) -> 'CDSList< String > const &'

AminoAcid_sidechain_arg(*args, **kwargs) -> 'CDSList< String > const &'

AminoAcid_sidechain_asn(*args, **kwargs) -> 'CDSList< String > const &'

AminoAcid_sidechain_asp(*args, **kwargs) -> 'CDSList< String > const &'

AminoAcid_sidechain_cys(*args, **kwargs) -> 'CDSList< String > const &'

AminoAcid_sidechain_gln(*args, **kwargs) -> 'CDSList< String > const &'

AminoAcid_sidechain_glu(*args, **kwargs) -> 'CDSList< String > const &'

AminoAcid_sidechain_gly(*args, **kwargs) -> 'CDSList< String > const &'

AminoAcid_sidechain_his(*args, **kwargs) -> 'CDSList< String > const &'

AminoAcid_sidechain_ile(*args, **kwargs) -> 'CDSList< String > const &'

AminoAcid_sidechain_leu(*args, **kwargs) -> 'CDSList< String > const &'

AminoAcid_sidechain_lys(*args, **kwargs) -> 'CDSList< String > const &'

AminoAcid_sidechain_met(*args, **kwargs) -> 'CDSList< String > const &'

AminoAcid_sidechain_phe(*args, **kwargs) -> 'CDSList< String > const &'

AminoAcid_sidechain_pro(*args, **kwargs) -> 'CDSList< String > const &'

AminoAcid_sidechain_ser(*args, **kwargs) -> 'CDSList< String > const &'

AminoAcid_sidechain_thr(*args, **kwargs) -> 'CDSList< String > const &'

AminoAcid_sidechain_trp(*args, **kwargs) -> 'CDSList< String > const &'

AminoAcid_sidechain_tyr(*args, **kwargs) -> 'CDSList< String > const &'

AminoAcid_sidechain_val(*args, **kwargs) -> 'CDSList< String > const &'

AminoAcid_trp1_ring(*args) -> 'CDSList< String >'

AminoAcid_trp2_ring(*args) -> 'CDSList< String >'

AminoAcid_tyr_ring(*args) -> 'CDSList< String >'

AminoAcid_use_names(*args, **kwargs) -> 'void'

CamShift(*args)

CamShift_generator(*args, **kwargs) -> 'CamShift *'

CamShift_stringToType(*args, **kwargs) -> 'CamShift::AtomType'

CamShift_typeToString(*args, **kwargs) -> 'String'

pyXplorHelp(*args) -> 'String'

Data
		cvar = <Swig global variables>