camshift
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/home/schwitrs/bzr-repo/xplor-python3/bin.Linux_x86_64/camshift.py

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# This file was automatically generated by SWIG (http://www.swig.org).
# Version 4.0.2
#
# Do not make changes to this file unless you know what you are doing--modify
# the SWIG interface file instead.

 
Classes
       
builtins.object
AminoAcid
DeriveData
CamShift(builtins.object)
CamShift1

 
class AminoAcid(builtins.object)
    AminoAcid(*args, **kwargs)
 

 
  Methods defined here:
__init__(self, *args, **kwargs)
Initialize self.  See help(type(self)) for accurate signature.
__repr__ = _swig_repr(self)

Static methods defined here:
__swig_destroy__ = delete_AminoAcid(...)
his_ring(*args, **kwargs) -> 'CDSList< String >'
isSP2(*args, **kwargs) -> 'bool'
is_backbone_h(*args, **kwargs) -> 'bool'
is_backbone_ha(*args, **kwargs) -> 'bool'
is_chi1_cx(*args, **kwargs) -> 'bool'
phe_ring(*args, **kwargs) -> 'CDSList< String >'
sidechain_ala(*args, **kwargs) -> 'CDSList< String > const &'
sidechain_arg(*args, **kwargs) -> 'CDSList< String > const &'
sidechain_asn(*args, **kwargs) -> 'CDSList< String > const &'
sidechain_asp(*args, **kwargs) -> 'CDSList< String > const &'
sidechain_cys(*args, **kwargs) -> 'CDSList< String > const &'
sidechain_gln(*args, **kwargs) -> 'CDSList< String > const &'
sidechain_glu(*args, **kwargs) -> 'CDSList< String > const &'
sidechain_gly(*args, **kwargs) -> 'CDSList< String > const &'
sidechain_his(*args, **kwargs) -> 'CDSList< String > const &'
sidechain_ile(*args, **kwargs) -> 'CDSList< String > const &'
sidechain_leu(*args, **kwargs) -> 'CDSList< String > const &'
sidechain_lys(*args, **kwargs) -> 'CDSList< String > const &'
sidechain_met(*args, **kwargs) -> 'CDSList< String > const &'
sidechain_phe(*args, **kwargs) -> 'CDSList< String > const &'
sidechain_pro(*args, **kwargs) -> 'CDSList< String > const &'
sidechain_ser(*args, **kwargs) -> 'CDSList< String > const &'
sidechain_thr(*args, **kwargs) -> 'CDSList< String > const &'
sidechain_trp(*args, **kwargs) -> 'CDSList< String > const &'
sidechain_tyr(*args, **kwargs) -> 'CDSList< String > const &'
sidechain_val(*args, **kwargs) -> 'CDSList< String > const &'
trp1_ring(*args, **kwargs) -> 'CDSList< String >'
trp2_ring(*args, **kwargs) -> 'CDSList< String >'
tyr_ring(*args, **kwargs) -> 'CDSList< String >'
use_names(*args, **kwargs) -> 'void'

Data descriptors defined here:
__dict__

 
dictionary for instance variables (if defined)
__weakref__

 
list of weak references to the object (if defined)
name_kind

 
thisown

 
The membership flag

Data and other attributes defined here:
CHARMM = 1
CTER = 2
IUPAC = 0
NTER = 1
STD = 0

 
class CamShift1(CamShift)
    CamShift1(*args, **kwargs)
 

 
 
Method resolution order:
CamShift1
CamShift
builtins.object

Methods defined here:
__init__(self, *args, **kwargs)
Initialize self.  See help(type(self)) for accurate signature.
__repr__ = _swig_repr(self)
addObservedChemicalShift(self, *args, **kwargs) -> 'void'
addResidue(self, *args, **kwargs) -> 'void'
assignAllCloseAtoms(self, *args, **kwargs) -> 'void'
assignCloseAtoms(self, *args, **kwargs) -> 'void'
cTerminus(self, *args, **kwargs) -> 'bool'
energy(self, *args, **kwargs) -> 'double'
flatBottomConst(self, *args, **kwargs) -> 'float_type const'
fullPredictor(self, *args, **kwargs) -> 'bool const'
getAllChemicalShifts(self, *args, **kwargs) -> 'void'
getAtomChemicalShifts(self, *args, **kwargs) -> 'CDSVector< double >'
get_debugatom1(self, *args, **kwargs) -> 'int'
get_debugatom2(self, *args, **kwargs) -> 'int'
get_distcutoff(self, *args, **kwargs) -> 'double'
get_forcecutoff(self, *args, **kwargs) -> 'double'
get_shiftcutoff(self, *args, **kwargs) -> 'double'
init(self, *args, **kwargs) -> 'void'
isSP2(self, *args, **kwargs) -> 'bool'
maxShiftDevMult(self, *args, **kwargs) -> 'float_type const'
movedTooMuch(self, *args, **kwargs) -> 'bool'
nTerminus(self, *args, **kwargs) -> 'bool'
printChemicalShifts(self, *args, **kwargs) -> 'void'
printEnergy(self, *args, **kwargs) -> 'void'
reserveMem(self, *args, **kwargs) -> 'void'
setFlatBottomConst(self, *args, **kwargs) -> 'void'
setFullPredictor(self, *args, **kwargs) -> 'void'
setMaxShiftDevMult(self, *args, **kwargs) -> 'void'
setObservedChemicalShift(self, *args, **kwargs) -> 'void'
set_debugatoms(self, *args, **kwargs) -> 'void'
set_distcutoff(self, *args, **kwargs) -> 'void'
set_forcecutoff(self, *args, **kwargs) -> 'void'
set_lambda(self, *args, **kwargs) -> 'void'
set_shiftcutoff(self, *args, **kwargs) -> 'void'
testCompleteness(self, *args, **kwargs) -> 'void'
updateValues(self, *args, **kwargs) -> 'void'

Static methods defined here:
__swig_destroy__ = delete_CamShift1(...)

Data descriptors defined here:
thisown

 
The membership flag

Data and other attributes defined here:
x = 0
y = 1
z = 2

Methods inherited from CamShift:
calcDerivs(self, *args, **kwargs) -> 'bool const'
chemicalShift(self, *args, **kwargs) -> 'float_type'
chemicalShifts(self, *args, **kwargs) -> 'CDSVector< float_type >'
getDerivative(self, *args, **kwargs) -> 'CDSList< Pair< int,Vec3 > >'
selection(self, *args, **kwargs) -> 'AtomSel'
setCalcDerivs(self, *args, **kwargs) -> 'void'
setTermsUsed(self, *args, **kwargs) -> 'void'
termsUsed(self, *args, **kwargs) -> 'int const'

Static methods inherited from CamShift:
generator(*args, **kwargs) -> 'CamShift *'
stringToType(*args, **kwargs) -> 'CamShift::AtomType'
typeToString(*args, **kwargs) -> 'String'

Data descriptors inherited from CamShift:
__dict__

 
dictionary for instance variables (if defined)
__weakref__

 
list of weak references to the object (if defined)

Data and other attributes inherited from CamShift:
AtomTypeSize = 7
C = 4
CA = 2
CB = 6
HA = 3
HN = 1
N = 0
O = 5
TERM_CONST = 1024
TERM_CURR = 2
TERM_DIHE = 128
TERM_DISULF = 512
TERM_EXTRA = 16
TERM_HBOND = 256
TERM_NBOND = 32
TERM_NEXT = 4
TERM_PREV = 1
TERM_RING = 64
TERM_SIDE = 8

 
class DeriveData(builtins.object)
    DeriveData(*args, **kwargs)
 

 
  Methods defined here:
__init__(self, *args, **kwargs)
Initialize self.  See help(type(self)) for accurate signature.
__repr__ = _swig_repr(self)

Static methods defined here:
__swig_destroy__ = delete_DeriveData(...)

Data descriptors defined here:
__dict__

 
dictionary for instance variables (if defined)
__weakref__

 
list of weak references to the object (if defined)
atomnum

 
data

 
restraint_residue_number

 
thisown

 
The membership flag

 
Functions
       
AminoAcid_his_ring(*args) -> 'CDSList< String >'
AminoAcid_isSP2(*args, **kwargs) -> 'bool'
AminoAcid_is_backbone_h(*args, **kwargs) -> 'bool'
AminoAcid_is_backbone_ha(*args, **kwargs) -> 'bool'
AminoAcid_is_chi1_cx(*args, **kwargs) -> 'bool'
AminoAcid_phe_ring(*args) -> 'CDSList< String >'
AminoAcid_sidechain_ala(*args, **kwargs) -> 'CDSList< String > const &'
AminoAcid_sidechain_arg(*args, **kwargs) -> 'CDSList< String > const &'
AminoAcid_sidechain_asn(*args, **kwargs) -> 'CDSList< String > const &'
AminoAcid_sidechain_asp(*args, **kwargs) -> 'CDSList< String > const &'
AminoAcid_sidechain_cys(*args, **kwargs) -> 'CDSList< String > const &'
AminoAcid_sidechain_gln(*args, **kwargs) -> 'CDSList< String > const &'
AminoAcid_sidechain_glu(*args, **kwargs) -> 'CDSList< String > const &'
AminoAcid_sidechain_gly(*args, **kwargs) -> 'CDSList< String > const &'
AminoAcid_sidechain_his(*args, **kwargs) -> 'CDSList< String > const &'
AminoAcid_sidechain_ile(*args, **kwargs) -> 'CDSList< String > const &'
AminoAcid_sidechain_leu(*args, **kwargs) -> 'CDSList< String > const &'
AminoAcid_sidechain_lys(*args, **kwargs) -> 'CDSList< String > const &'
AminoAcid_sidechain_met(*args, **kwargs) -> 'CDSList< String > const &'
AminoAcid_sidechain_phe(*args, **kwargs) -> 'CDSList< String > const &'
AminoAcid_sidechain_pro(*args, **kwargs) -> 'CDSList< String > const &'
AminoAcid_sidechain_ser(*args, **kwargs) -> 'CDSList< String > const &'
AminoAcid_sidechain_thr(*args, **kwargs) -> 'CDSList< String > const &'
AminoAcid_sidechain_trp(*args, **kwargs) -> 'CDSList< String > const &'
AminoAcid_sidechain_tyr(*args, **kwargs) -> 'CDSList< String > const &'
AminoAcid_sidechain_val(*args, **kwargs) -> 'CDSList< String > const &'
AminoAcid_trp1_ring(*args) -> 'CDSList< String >'
AminoAcid_trp2_ring(*args) -> 'CDSList< String >'
AminoAcid_tyr_ring(*args) -> 'CDSList< String >'
AminoAcid_use_names(*args, **kwargs) -> 'void'
CamShift(*args)
CamShift_generator(*args, **kwargs) -> 'CamShift *'
CamShift_stringToType(*args, **kwargs) -> 'CamShift::AtomType'
CamShift_typeToString(*args, **kwargs) -> 'String'
pyXplorHelp(*args) -> 'String'

 
Data
        cvar = <Swig global variables>