#============================================================================
# Ez potential for quick embedding of transmembrane domains.
# Reference: 
#   Senes, A.; Chadi, D. C.; Law, P. B.; Walters, R. F. S.; Nanda, V.; DeGrado, W. F. J. Mol. Biol. 2007, 366, 436-448.

Classes
		pyPot.PyPot(builtins.object) EzPot   class EzPot(pyPot.PyPot)     EzPot(name, sel='')       Method resolution order: EzPot pyPot.PyPot builtins.object Methods defined here: __init__(self, name, sel='') Initialize self.  See help(type(self)) for accurate signature. calcEnergy(self) calcEnergyAndDerivList(self, derivs) calcXYCenter(self) resEzDerive(self, z, resitype) resEzEnergy(self, z, resitype) setLipid(self, Type) setPara(self, type, E0, Zmid, n) setScale(self, scale) setThickness(self, T) setWall(self, wall) setXYCenter(self, s) Methods inherited from pyPot.PyPot: __deref__(self, *args, **kwargs) -> 'PyPot *' __oldinit__ = __init__(self, *args, **kwargs) __ref__(self, *args, **kwargs) -> 'PyPot &' __repr__ = _swig_repr(self) calcEnergyAndDerivs(self, *args, **kwargs) -> 'float_type' decrRefCnt(self, *args, **kwargs) -> 'void' incrRefCnt(self, *args, **kwargs) -> 'void' instanceData(self, *args, **kwargs) -> 'PyObject *' instanceName(self, *args, **kwargs) -> 'char const *' numRestraints(self, *args, **kwargs) -> 'int' potName(self, *args, **kwargs) -> 'char const *' pyXplorHelp(self, *args, **kwargs) -> 'String' pythonPot(self, *args, **kwargs) -> 'PyObject *' refCnt(self, *args, **kwargs) -> 'int' registerInstanceData(self, *args, **kwargs) -> 'void' registerTo(self, *args, **kwargs) -> 'void' resetInstanceName(self, *args, **kwargs) -> 'void' resetPotName(self, *args, **kwargs) -> 'void' rms(self, *args, **kwargs) -> 'float_type' scale(self, *args, **kwargs) -> 'float_type const' setThreshold(self, *args, **kwargs) -> 'void' threshold(self, *args, **kwargs) -> 'float_type const' unRegister(self, *args, **kwargs) -> 'void' updateDelta(self, *args, **kwargs) -> 'void' updateValues(self, *args, **kwargs) -> 'void' violations(self, *args, **kwargs) -> 'float_type' Static methods inherited from pyPot.PyPot: __swig_destroy__ = delete_PyPot(...) Data descriptors inherited from pyPot.PyPot: __dict__   dictionary for instance variables (if defined) __weakref__   list of weak references to the object (if defined) instanceDataCleanup   instanceDataCreate   instanceData_   modified   registeredSimulations   thisown   The membership flag

Functions
		calcTiltAngle(zMin=0, zMax=0, res='') calcTiltAngleNH(res='') exp(x, /) Return e raised to the power of x. fabs(x, /) Return the absolute value of the float x. fitTiltAngleIH(pdb='', alphaSel='') flipAll(Axis='X', theta=180) Needs to be documented and moved somewhere more appropriate. pow(x, y, /) Return x**y (x to the power of y). setCenter(selection='not PSEUDO', zshift=0) Translate the coordinates of all atoms such that the centroid of the specified atomSel.AtomSel is set to the origin. The zshift argument specifies an offset for the z component of the centroid. setCenterXY(selection='not PSEUDO') Translate the coordinates of all atoms such that the x- and y- components of the centroid of the specified atomSel.AtomSel are set to the origin. The z-coordinates are not translated.

Data
		idealHelixModel = '\nATOM 1 N ALA 1 -0.802 -1.224 ...1.297 1.273 16.875 1.00 0.00 ALPH\nEND \n' lipidType = {'16,22PC': (38.3, 25.2, 27.4), 'DGDG': (38.8, 14.4, 22.5), 'DGDG|POPE': (38.9, 15.1, 25.0, 1.0), 'DGDG|SOPC': (38.9, 18.3, 25.1, 0.8), 'DLPC': (31.6, 27.4, 18.9), 'DMPC-27': (35.7, 26.5, 23.1), 'DMPE': (40.4, 22.7, 28.8), 'DOPC': (35.9, 28.1, 25.4), 'DOPE|DOPC': (37.7, 19.4, 28.6, 3.0), 'DOPS': (39.6, 13.9, 26.2), ...}