pasdPeak
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/home/schwitrs/bzr-repo/xplor-python3/bin.Linux_x86_64/pasdPeak.py

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# This file was automatically generated by SWIG (http://www.swig.org).
# Version 4.0.2
#
# Do not make changes to this file unless you know what you are doing--modify
# the SWIG interface file instead.

 
Classes
       
builtins.object
CDSlist_PeakAssignmentPtr
CDSlist_ShiftAssignmentPtr
Peak
PeakAssignment
ShiftAssignment

 
class CDSlist_PeakAssignmentPtr(builtins.object)
    CDSlist_PeakAssignmentPtr(*args)
 

 
  Methods defined here:
__delitem__(self, *args, **kwargs) -> 'void'
__getitem__(self, *args) -> 'CDSList< PeakAssignment * >'
__getslice__(self, *args, **kwargs) -> 'CDSList< PeakAssignment * >'
__init__(self, *args)
Initialize self.  See help(type(self)) for accurate signature.
__len__(self, *args, **kwargs) -> 'int'
__repr__ = _swig_repr(self)
__setitem__(self, *args, **kwargs) -> 'void'
append(self, *args, **kwargs) -> 'void'
help(self, *args, **kwargs) -> 'String'
remove(self, *args, **kwargs) -> 'void'
removeAll(self, *args, **kwargs) -> 'void'

Static methods defined here:
__swig_destroy__ = delete_CDSlist_PeakAssignmentPtr(...)

Data descriptors defined here:
__dict__

 
dictionary for instance variables (if defined)
__weakref__

 
list of weak references to the object (if defined)
thisown

 
The membership flag

 
class CDSlist_ShiftAssignmentPtr(builtins.object)
    CDSlist_ShiftAssignmentPtr(*args)
 

 
  Methods defined here:
__delitem__(self, *args, **kwargs) -> 'void'
__getitem__(self, *args) -> 'CDSList< ShiftAssignment * >'
__getslice__(self, *args, **kwargs) -> 'CDSList< ShiftAssignment * >'
__init__(self, *args)
Initialize self.  See help(type(self)) for accurate signature.
__len__(self, *args, **kwargs) -> 'int'
__repr__ = _swig_repr(self)
__setitem__(self, *args, **kwargs) -> 'void'
append(self, *args, **kwargs) -> 'void'
help(self, *args, **kwargs) -> 'String'
remove(self, *args, **kwargs) -> 'void'
removeAll(self, *args, **kwargs) -> 'void'

Static methods defined here:
__swig_destroy__ = delete_CDSlist_ShiftAssignmentPtr(...)

Data descriptors defined here:
__dict__

 
dictionary for instance variables (if defined)
__weakref__

 
list of weak references to the object (if defined)
thisown

 
The membership flag

 
class Peak(builtins.object)
    Peak(*args, **kwargs)
 

 
  Methods defined here:
__init__(self, *args, **kwargs)
Initialize self.  See help(type(self)) for accurate signature.
__repr__ = _swig_repr(self)
activateAllPeakAssigns(self, *args, **kwargs) -> 'void'
addPeakAssignment(self, *args, **kwargs) -> 'void'
addShiftAssignment(self, *args, **kwargs) -> 'void'
appendToNote(self, *args, **kwargs) -> 'void'
calcEnergy(self, *args, **kwargs) -> 'EnergyReport'
calcEnergyAndDerivs(self, *args, **kwargs) -> 'EnergyReport'
chosenPeakAssignment(self, *args, **kwargs) -> 'PeakAssignment *'
fromHeavyatomShift(self, *args, **kwargs) -> 'float_type'
fromProtonShift(self, *args, **kwargs) -> 'float_type'
fromShiftAssignments(self, *args, **kwargs) -> 'CDSList< ShiftAssignmentPtr >'
hasFromHeavyatomShift(self, *args, **kwargs) -> 'int'
hasFromProtonShift(self, *args, **kwargs) -> 'int'
hasIntensity(self, *args, **kwargs) -> 'int'
hasPeakAssignmentNamed(self, *args, **kwargs) -> 'int'
hasShiftAssignmentNamed(self, *args, **kwargs) -> 'int'
hasToHeavyatomShift(self, *args, **kwargs) -> 'int'
hasToProtonShift(self, *args, **kwargs) -> 'int'
inactivateAllPeakAssigns(self, *args, **kwargs) -> 'void'
intensity(self, *args, **kwargs) -> 'float_type'
isActive(self, *args, **kwargs) -> 'int'
isAssigned(self, *args, **kwargs) -> 'int'
isCrowded(self, *args, **kwargs) -> 'int'
isGood(self, *args, **kwargs) -> 'int'
isInactive(self, *args, **kwargs) -> 'int'
isIntermolecular(self, *args, **kwargs) -> 'int'
isIntraresidue(self, *args, **kwargs) -> 'int'
isLongRange(self, *args, **kwargs) -> 'int'
isSequential(self, *args, **kwargs) -> 'int'
isShortRange(self, *args, **kwargs) -> 'int'
lowBound(self, *args, **kwargs) -> 'float_type'
lowestViolation(self, *args, **kwargs) -> 'float_type'
lowestViolationsPrimarySeqDist(self, *args, **kwargs) -> 'int'
name(self, *args, **kwargs) -> 'String const &'
note(self, *args, **kwargs) -> 'String const &'
numActivePeakAssigns(self, *args, **kwargs) -> 'int'
numFromShiftAssignments(self, *args, **kwargs) -> 'int'
numPeakAssignments(self, *args, **kwargs) -> 'int'
numToShiftAssignments(self, *args, **kwargs) -> 'int'
peakAssignmentNamed(self, *args, **kwargs) -> 'PeakAssignment *'
peakAssignments(self, *args, **kwargs) -> 'CDSList< PeakAssignmentPtr >'
peakAssignmentsWithShiftAssignmentNamed(self, *args, **kwargs) -> 'CDSList< PeakAssignmentPtr >'
peakAssignments_sorted(self, *args, **kwargs) -> 'CDSList< PeakAssignmentPtr >'
prevLikelihood(self, *args, **kwargs) -> 'float_type'
primarySeqDist(self, *args, **kwargs) -> 'int'
pyXplorHelp(self, *args, **kwargs) -> 'String'
removeAllPeakAssignments(self, *args, **kwargs) -> 'void'
removeAllShiftAssignments(self, *args, **kwargs) -> 'void'
removePeakAssignmentNamed(self, *args, **kwargs) -> 'void'
removeShiftAssignmentNamed(self, *args, **kwargs) -> 'void'
resetFromHeavyatomShift(self, *args, **kwargs) -> 'void'
resetFromProtonShift(self, *args, **kwargs) -> 'void'
resetIntensity(self, *args, **kwargs) -> 'void'
resetSavedState(self, *args, **kwargs) -> 'void'
resetToHeavyatomShift(self, *args, **kwargs) -> 'void'
resetToProtonShift(self, *args, **kwargs) -> 'void'
revertToSavedState(self, *args, **kwargs) -> 'void'
saveCurrentState(self, *args, **kwargs) -> 'void'
setFromHeavyatomShift(self, *args, **kwargs) -> 'void'
setFromProtonShift(self, *args, **kwargs) -> 'void'
setIntensity(self, *args, **kwargs) -> 'void'
setIsCrowded(self, *args, **kwargs) -> 'void'
setLowBound(self, *args, **kwargs) -> 'void'
setNotCrowded(self, *args, **kwargs) -> 'void'
setNote(self, *args, **kwargs) -> 'void'
setToHeavyatomShift(self, *args, **kwargs) -> 'void'
setToProtonShift(self, *args, **kwargs) -> 'void'
setUpBound(self, *args, **kwargs) -> 'void'
shiftAssignmentNamed(self, *args, **kwargs) -> 'ShiftAssignmentPtr'
toHeavyatomShift(self, *args, **kwargs) -> 'float_type'
toProtonShift(self, *args, **kwargs) -> 'float_type'
toShiftAssignments(self, *args, **kwargs) -> 'CDSList< ShiftAssignmentPtr >'
upBound(self, *args, **kwargs) -> 'float_type'
updateActivation(self, *args, **kwargs) -> 'void'
updateInWrongNeighborhood(self, *args, **kwargs) -> 'void'
updatePrimarySeqDist(self, *args, **kwargs) -> 'void'
updateShiftAssignmentActivePeakPositions(self, *args, **kwargs) -> 'void'

Static methods defined here:
__swig_destroy__ = delete_Peak(...)

Data descriptors defined here:
__dict__

 
dictionary for instance variables (if defined)
__weakref__

 
list of weak references to the object (if defined)
thisown

 
The membership flag

 
class PeakAssignment(builtins.object)
    PeakAssignment(*args, **kwargs)
 

 
  Methods defined here:
__init__(self, *args, **kwargs)
Initialize self.  See help(type(self)) for accurate signature.
__repr__ = _swig_repr(self)
activate(self, *args, **kwargs) -> 'void'
addLinkedPeakAssignment(self, *args, **kwargs) -> 'void'
addLinkedPeakAssignmentName(self, *args, **kwargs) -> 'void'
appendToNote(self, *args, **kwargs) -> 'void'
aveExp(self, *args, **kwargs) -> 'float_type const'
calcEnergy(self, *args, **kwargs) -> 'EnergyReport'
calcEnergyAndDerivs(self, *args, **kwargs) -> 'EnergyReport'
distance(self, *args, **kwargs) -> 'float_type'
fromAssignment(self, *args, **kwargs) -> 'ShiftAssignment *'
fromAssignmentName(self, *args, **kwargs) -> 'String'
fromHeavyatomShift(self, *args, **kwargs) -> 'float_type'
fromProtonSelection(self, *args, **kwargs) -> 'AtomSel *'
fromProtonShift(self, *args, **kwargs) -> 'float_type'
hasFromHeavyatomShift(self, *args, **kwargs) -> 'int'
hasFromProtonShift(self, *args, **kwargs) -> 'int'
hasPreviousLikelihood(self, *args, **kwargs) -> 'int'
hasToHeavyatomShift(self, *args, **kwargs) -> 'int'
hasToProtonShift(self, *args, **kwargs) -> 'int'
hasUnfoldedFromHeavyatomPeakPosition(self, *args, **kwargs) -> 'int'
hasUnfoldedFromProtonPeakPosition(self, *args, **kwargs) -> 'int'
hasUnfoldedToHeavyatomPeakPosition(self, *args, **kwargs) -> 'int'
hasUnfoldedToProtonPeakPosition(self, *args, **kwargs) -> 'int'
inactivate(self, *args, **kwargs) -> 'void'
incrementNumFiltersFailed(self, *args, **kwargs) -> 'void'
isActive(self, *args, **kwargs) -> 'int'
isBackbone(self, *args, **kwargs) -> 'int'
isBackboneSequential(self, *args, **kwargs) -> 'int'
isGood(self, *args, **kwargs) -> 'int'
isInWrongNeighborhood(self, *args, **kwargs) -> 'int'
isIntermolecular(self, *args, **kwargs) -> 'int'
isIntraresidue(self, *args, **kwargs) -> 'int'
isLongRange(self, *args, **kwargs) -> 'int'
isSequential(self, *args, **kwargs) -> 'int'
isShortRange(self, *args, **kwargs) -> 'int'
linkedPeakAssignmentNames(self, *args, **kwargs) -> 'CDSList< String >'
linkedPeakAssignments(self, *args, **kwargs) -> 'CDSList< PeakAssignment * >'
lowBoundCorrection(self, *args, **kwargs) -> 'float_type'
nMono(self, *args, **kwargs) -> 'int const'
name(self, *args, **kwargs) -> 'String const &'
note(self, *args, **kwargs) -> 'String const &'
numFiltersFailed(self, *args, **kwargs) -> 'int'
previousLikelihood(self, *args, **kwargs) -> 'float_type'
primarySeqDist(self, *args, **kwargs) -> 'int'
removeLinkedPeakAssignmentName(self, *args, **kwargs) -> 'void'
resetLinkedPeakAssignmentNames(self, *args, **kwargs) -> 'void'
resetLinkedPeakAssignments(self, *args, **kwargs) -> 'void'
resetNumFiltersFailed(self, *args, **kwargs) -> 'void'
resetPreviousLikelihood(self, *args, **kwargs) -> 'void'
resetSavedState(self, *args, **kwargs) -> 'void'
resetUnfoldedFromHeavyatomPeakPosition(self, *args, **kwargs) -> 'void'
resetUnfoldedFromProtonPeakPosition(self, *args, **kwargs) -> 'void'
resetUnfoldedToHeavyatomPeakPosition(self, *args, **kwargs) -> 'void'
resetUnfoldedToProtonPeakPosition(self, *args, **kwargs) -> 'void'
revertToSavedState(self, *args, **kwargs) -> 'void'
saveCurrentState(self, *args, **kwargs) -> 'void'
selectionsIntersect(self, *args, **kwargs) -> 'int'
setAveExp(self, *args, **kwargs) -> 'void'
setBad(self, *args, **kwargs) -> 'void'
setFromAssignment(self, *args, **kwargs) -> 'void'
setGood(self, *args, **kwargs) -> 'void'
setInRightNeighborhood(self, *args, **kwargs) -> 'void'
setInWrongNeighborhood(self, *args, **kwargs) -> 'void'
setLowBoundCorrection(self, *args, **kwargs) -> 'void'
setNMono(self, *args, **kwargs) -> 'void'
setNote(self, *args, **kwargs) -> 'void'
setPreviousLikelihood(self, *args, **kwargs) -> 'void'
setToAssignment(self, *args, **kwargs) -> 'void'
setUnfoldedFromHeavyatomPeakPosition(self, *args, **kwargs) -> 'void'
setUnfoldedFromProtonPeakPosition(self, *args, **kwargs) -> 'void'
setUnfoldedToHeavyatomPeakPosition(self, *args, **kwargs) -> 'void'
setUnfoldedToProtonPeakPosition(self, *args, **kwargs) -> 'void'
setUpBoundCorrection(self, *args, **kwargs) -> 'void'
toAssignment(self, *args, **kwargs) -> 'ShiftAssignment *'
toAssignmentName(self, *args, **kwargs) -> 'String'
toHeavyatomShift(self, *args, **kwargs) -> 'float_type'
toProtonSelection(self, *args, **kwargs) -> 'AtomSel *'
toProtonShift(self, *args, **kwargs) -> 'float_type'
unfoldedFromHeavyatomPeakPosition(self, *args, **kwargs) -> 'float_type'
unfoldedFromProtonPeakPosition(self, *args, **kwargs) -> 'float_type'
unfoldedToHeavyatomPeakPosition(self, *args, **kwargs) -> 'float_type'
unfoldedToProtonPeakPosition(self, *args, **kwargs) -> 'float_type'
upBoundCorrection(self, *args, **kwargs) -> 'float_type'
updateActivation(self, *args, **kwargs) -> 'void'
updateInWrongNeighborhood(self, *args, **kwargs) -> 'void'
updateIsBackbone(self, *args, **kwargs) -> 'void'
updatePrimarySeqDist(self, *args, **kwargs) -> 'void'
updateSelectionsIntersect(self, *args, **kwargs) -> 'void'
violation(self, *args, **kwargs) -> 'float_type'

Static methods defined here:
__swig_destroy__ = delete_PeakAssignment(...)

Data descriptors defined here:
__dict__

 
dictionary for instance variables (if defined)
__weakref__

 
list of weak references to the object (if defined)
thisown

 
The membership flag

Data and other attributes defined here:
defaultAveExp = 6

 
class ShiftAssignment(builtins.object)
    ShiftAssignment(*args, **kwargs)
 

 
  Methods defined here:
__init__(self, *args, **kwargs)
Initialize self.  See help(type(self)) for accurate signature.
__repr__ = _swig_repr(self)
addLinkedShiftAssignment(self, *args, **kwargs) -> 'void'
addLinkedShiftAssignmentName(self, *args, **kwargs) -> 'void'
appendToNote(self, *args, **kwargs) -> 'void'
cachedIndex(self, *args, **kwargs) -> 'int'
distanceToShiftAssignment(self, *args, **kwargs) -> 'float_type'
foldedHeavyatomShift(self, *args, **kwargs) -> 'float_type'
foldedProtonShift(self, *args, **kwargs) -> 'float_type'
foldedSign(self, *args, **kwargs) -> 'int'
hasCachedIndex(self, *args, **kwargs) -> 'int'
hasFoldedHeavyatomShift(self, *args, **kwargs) -> 'int'
hasFoldedProtonShift(self, *args, **kwargs) -> 'int'
hasHeavyatomSelection(self, *args, **kwargs) -> 'int'
hasHeavyatomShift(self, *args, **kwargs) -> 'int'
hasHeavyatomTolerance(self, *args, **kwargs) -> 'int'
hasNoeCompleteness(self, *args, **kwargs) -> 'int'
hasPreviousLikelihood(self, *args, **kwargs) -> 'int'
hasProtonSelection(self, *args, **kwargs) -> 'int'
hasProtonShift(self, *args, **kwargs) -> 'int'
hasProtonTolerance(self, *args, **kwargs) -> 'int'
hasStereoPartner(self, *args, **kwargs) -> 'int'
hasStereoPartnerName(self, *args, **kwargs) -> 'int'
hasToFromPartner(self, *args, **kwargs) -> 'int'
hasToFromPartnerName(self, *args, **kwargs) -> 'int'
heavyatomSelection(self, *args, **kwargs) -> 'AtomSel *'
heavyatomSelectionString(self, *args, **kwargs) -> 'String'
heavyatomShift(self, *args, **kwargs) -> 'float_type'
heavyatomTolerance(self, *args, **kwargs) -> 'float_type'
incrementNumAccountedNeighbors(self, *args, **kwargs) -> 'void'
incrementNumUnaccountedNeighbors(self, *args, **kwargs) -> 'void'
isFrom(self, *args, **kwargs) -> 'int'
isGood(self, *args, **kwargs) -> 'int'
isInWrongNeighborhood(self, *args, **kwargs) -> 'int'
isMethyl(self, *args, **kwargs) -> 'int'
isMonomericallyEqualTo(self, *args, **kwargs) -> 'int'
isTo(self, *args, **kwargs) -> 'int'
linkedShiftAssignmentNames(self, *args, **kwargs) -> 'CDSList< String >'
linkedShiftAssignments(self, *args, **kwargs) -> 'CDSList< ShiftAssignment * >'
name(self, *args, **kwargs) -> 'String const &'
noeCompleteness(self, *args, **kwargs) -> 'float_type'
note(self, *args, **kwargs) -> 'String const &'
numAccountedNeighbors(self, *args, **kwargs) -> 'int'
numLinkedShiftAssignments(self, *args, **kwargs) -> 'int'
numUnaccountedNeighbors(self, *args, **kwargs) -> 'int'
previousLikelihood(self, *args, **kwargs) -> 'float_type'
primarySeqDistToSA(self, *args, **kwargs) -> 'int'
protonPeakPositionScatter(self, *args, **kwargs) -> 'float_type'
protonSelection(self, *args, **kwargs) -> 'AtomSel *'
protonSelectionString(self, *args, **kwargs) -> 'String'
protonShift(self, *args, **kwargs) -> 'float_type'
protonTolerance(self, *args, **kwargs) -> 'float_type'
recordProtonPeakPosition(self, *args, **kwargs) -> 'void'
removeAllLinkedShiftAssignments(self, *args, **kwargs) -> 'void'
removeLinkedShiftAssignmentName(self, *args, **kwargs) -> 'void'
resetCachedIndex(self, *args, **kwargs) -> 'void'
resetFoldedHeavyatomShift(self, *args, **kwargs) -> 'void'
resetFoldedProtonShift(self, *args, **kwargs) -> 'void'
resetHeavyatomShift(self, *args, **kwargs) -> 'void'
resetHeavyatomTolerance(self, *args, **kwargs) -> 'void'
resetNoeCompleteness(self, *args, **kwargs) -> 'void'
resetNumAccountedNeighbors(self, *args, **kwargs) -> 'void'
resetNumUnaccountedNeighbors(self, *args, **kwargs) -> 'void'
resetPreviousLikelihood(self, *args, **kwargs) -> 'void'
resetProtonPeakPositions(self, *args, **kwargs) -> 'void'
resetProtonShift(self, *args, **kwargs) -> 'void'
resetProtonTolerance(self, *args, **kwargs) -> 'void'
resetSavedState(self, *args, **kwargs) -> 'void'
resetStereoPartner(self, *args, **kwargs) -> 'void'
resetStereoPartnerName(self, *args, **kwargs) -> 'void'
resetToFromPartner(self, *args, **kwargs) -> 'void'
resetToFromPartnerName(self, *args, **kwargs) -> 'void'
revertToSavedState(self, *args, **kwargs) -> 'void'
saveCurrentState(self, *args, **kwargs) -> 'void'
scatterValues(self, *args, **kwargs) -> 'CDSList< float_type >'
setBad(self, *args, **kwargs) -> 'void'
setCachedIndex(self, *args, **kwargs) -> 'void'
setFoldedHeavyatomShift(self, *args, **kwargs) -> 'void'
setFoldedProtonShift(self, *args, **kwargs) -> 'void'
setFoldedSign(self, *args, **kwargs) -> 'void'
setGood(self, *args, **kwargs) -> 'void'
setHeavyatomSelection(self, *args, **kwargs) -> 'void'
setHeavyatomSelectionString(self, *args, **kwargs) -> 'void'
setHeavyatomShift(self, *args, **kwargs) -> 'void'
setHeavyatomTolerance(self, *args, **kwargs) -> 'void'
setInRightNeighborhood(self, *args, **kwargs) -> 'void'
setInWrongNeighborhood(self, *args, **kwargs) -> 'void'
setIsFrom(self, *args, **kwargs) -> 'void'
setIsMethyl(self, *args, **kwargs) -> 'void'
setIsTo(self, *args, **kwargs) -> 'void'
setNoeCompleteness(self, *args, **kwargs) -> 'void'
setNotMethyl(self, *args, **kwargs) -> 'void'
setNote(self, *args, **kwargs) -> 'void'
setPreviousLikelihood(self, *args, **kwargs) -> 'void'
setProtonSelection(self, *args, **kwargs) -> 'void'
setProtonSelectionString(self, *args, **kwargs) -> 'void'
setProtonShift(self, *args, **kwargs) -> 'void'
setProtonTolerance(self, *args, **kwargs) -> 'void'
setStereoPartner(self, *args, **kwargs) -> 'void'
setStereoPartnerName(self, *args, **kwargs) -> 'void'
setToFromPartner(self, *args, **kwargs) -> 'void'
setToFromPartnerName(self, *args, **kwargs) -> 'void'
shiftAssignWithinDist(self, *args, **kwargs) -> 'int'
stereoPartner(self, *args, **kwargs) -> 'ShiftAssignment *'
stereoPartnerName(self, *args, **kwargs) -> 'String'
toFromPartner(self, *args, **kwargs) -> 'ShiftAssignment *'
toFromPartnerName(self, *args, **kwargs) -> 'String'
updateInWrongNeighborhood(self, *args, **kwargs) -> 'void'

Static methods defined here:
__swig_destroy__ = delete_ShiftAssignment(...)

Data descriptors defined here:
__dict__

 
dictionary for instance variables (if defined)
__weakref__

 
list of weak references to the object (if defined)
thisown

 
The membership flag

 
Functions
       
pyXplorHelp(*args) -> 'String'

 
Data
        cvar = <Swig global variables>